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transcripts
•
reset
1
vote
4
replies
1.0k
views
Simple UCSC to transcript annotation
annotation
ucsc
tdx
transcripts
6.8 years ago
AntonS
• 0
1
vote
4
replies
1.3k
views
comparing transcripts expression between conditions
salmon
transcripts
significance
counts
7.8 years ago
Assa Yeroslaviz
★ 1.5k
3
votes
7
replies
3.8k
views
Transcript level differential expression analysis
deseq2
deseqdataset
transcripts
updated 7.1 years ago by
Michael Love
41k • written 7.1 years ago by
tarun2
• 0
2
votes
7
replies
2.7k
views
HTA 2.0 and Transcript level analysis
hta2.0
transcripts
6.7 years ago
giroudpaul
▴ 40
1
vote
1
reply
1.2k
views
Ensembl transcripts returned by getBM not matching the biomart website
ensembl
transcripts
getbm
biomart
6.2 years ago
hihi.joshi
• 0
2
votes
1
reply
1.5k
views
Transcript biotypes for ncRNA in GRCh37 using biomaRt?
grch37
transcripts
biotype
biomaRt
ncrna
updated 5.7 years ago by
James W. MacDonald
65k • written 5.7 years ago by
sergio.martinezcuesta
▴ 10
1
vote
2
replies
1.4k
views
DEXSeq transcripts per condition
DEXSeq
transcripts
isoforms
updated 8.9 years ago by
Alejandro Reyes
★ 1.9k • written 9.0 years ago by
peter_venhuizen
• 0
0
votes
5
replies
1.9k
views
Help for Affymetrix HTA 2.0 [transcript (gene) version] annotation
hta2.0
annotation
transcripts
updated 5.6 years ago by
svlachavas
▴ 830 • written 5.6 years ago by
Biomed
• 0
8 results • Page
1 of 1
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Replies
Comment: get BM error
by
James W. MacDonald
65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Comment: get BM error
by
Fara
• 0
Thank you for your response. The primary reason for translating Ensembl IDs into Entrez Gene IDs is to perform KEGG (Kyoto Encyclopedia of…
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function
by
James W. MacDonald
65k
That's weird. I don't have any problem at all generating the `OrgDb` on my box. How big is the gene2pubmed.gz file? I get this: ``` gzip -…
Answer: get BM error
by
James W. MacDonald
65k
The genes you present are orthologous mappings from D. rerio to other teleost fishes, so it is probably going to be difficult to map to NCB…
Answer: How to retrieve gene ontology GO class from gene list?
by
James W. MacDonald
65k
You can also use a combination of the `org.Hs.eg.db` and `GO.db` packages. ``` > library(GO.db) > library(org.Hs.eg.db) > go <- m…
Votes
Answer: get BM error
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
Comment: Different Shrunk Log2FC according with reference
Reproducibility issue with scran together with lapply and BiocParallel
C: SGSeq: moving toward diffex from SGSeq analysis
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