Bioconductor Transformation

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gsva gene set variation analysis normalization transformation rna-seq

5.2 years ago • updated 4.4 years ago rached ▴ 50

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flowcore flow cytometry transformation

updated 5.5 years ago by SamGG ▴ 290 • written 5.5 years ago by Andrew Box ▴ 10

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rna-seq deseq2 warnings nbinomWaldTest transformation

updated 2.9 years ago by Michael Love 40k • written 2.9 years ago by andreia ▴ 10

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flowcore flow cytometry flowdensity hyperlog transformation

updated 4.8 years ago by Jiang, Mike ★ 1.3k • written 4.8 years ago by Joseph.Hanson • 0

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Comment: SummarizedExperiment is now warning on attach about `read_block` namespace confl by ansleyharralson • 0

Any estimate on when DelayedArray 0.26.3 will be released for macOS Binary (arm64)? Latest is still 0.26.02 best I can tell.

Comment: Question on constructing design matrix and defining contrasts for analysis by mohammedtoufiq91 ▴ 10

@gordonsmyth thank you, yes, please find the targets frame below. Basically, I want to create a design matrix and binarize by 0 and 1 to be…

Comment: WGCNA: many over and under-expressed features in modules of a signed network by andres.firrincieli ▴ 50

answered in Biostars: https://www.biostars.org/p/9564943/

Comment: Multitasking and Rbwa by Jean-Philippe Fortin • 0

Indeed, one can pass additional arguments to the `bwa_aln` function in `Rbwa`: bwa_aln(type="single", index_prefix=index_pr…

Comment: biomaRt error: database disk image is malformed by Emile • 0

UNBORKING the bioMaRt cache `biomaRt::biomartCacheClear()` also fixes the troubles with PANTHER.db installation which have also something t…

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Answer: Question on constructing design matrix and defining contrasts for analysis

WGCNA: many over and under-expressed features in modules of a signed network

Comment: WGCNA: many over and under-expressed features in modules of a signed network

Answer: DESeq2 or edgeR for Presence and Absence of Proteins

Answer: Normalized counts from LRT or Wald test?

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