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treeio
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172
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Treeio as.treedata function seq lenght error
treeio
4 months ago
nromerov
• 0
0
votes
0
replies
841
views
How to place jplace Querries from EPA RAxML on the tree as branches in Teeio/ggtree?
treeio
EPA
jplace
RAxML
ggtree
3.5 years ago
Vincent
• 0
0
votes
3
replies
2.6k
views
How can I read in BEAST nexus tree with treeio and get all node values
treeio
beast
nexus
ips
OutbreakTools
5.8 years ago
sknu003
• 0
0
votes
1
reply
1.9k
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How to save changes on a phylogeneitc tree using ggtree and treeio?
ggtree
treeio
6.2 years ago
jdimopoulos21
• 0
0
votes
1
reply
1.7k
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tip_glom and annotations?
ggtree
treeio
phyloseq
annotation
tip_glom
updated 6.6 years ago by
Guangchuang Yu
★ 1.2k • written 6.6 years ago by
werdnus
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Comment: ensemblVEP deprecation and how to reproduce
by
Vincent J. Carey, Jr.
6.7k
What aspect of ensemblVEP are you looking for? The vignette https://bioconductor.org/packages/release/bioc/vignettes/VariantAnnotation/in…
Answer: Help with design matrix for RNA-seq data using edgeR
by
Gordon Smyth
51k
This forum is intended to help with software usage and syntax rather than to answer research questions, and your question is a definitely a…
Answer: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic
by
Michael Love
42k
DESeq2 has a way of fixing the reference pseudo-sample used for normalization. In estimateSizeFactors man page, you will see an argument g…
Comment: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic
by
Michael Love
42k
Sorry - I requested this to be posted here, I will answer.
Answer: tximport data import
by
Michael Love
42k
Reminder that tximeta exists -- if you are working with mouse or human data and using Ensembl or GENCODE (or RefSeq, but not "latest" which…
Votes
Answer: Should tSNE from biol. replicates look alike?
Answer: Should tSNE from biol. replicates look alike?
Comment: fgsea stuck in an infinite loop in the middle of the run
Answer: Empty Results from champ.DMP Despite Expected Output
Answer: How to use compareCluster in ClusterProfiler?
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