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trigger
•
reset
0
votes
0
replies
2.4k
views
WGCNA RNAseq
RNASeq
Cancer
trigger
RNASeq
Cancer
trigger
10.2 years ago
Anna Esteve Codina
▴ 20
0
votes
1
reply
2.1k
views
Semantics of GenomicRanges gaps()
Cancer
GenomicRanges
trigger
Cancer
GenomicRanges
trigger
updated 10.7 years ago by
Valerie Obenchain
★ 6.8k • written 10.7 years ago by
Dan Du
▴ 210
0
votes
2
replies
1.7k
views
cannot allocate vector of size 762 Mo ! One more time !
affy
affyio
trigger
affy
affyio
trigger
updated 15.9 years ago by
cstrato
★ 3.9k • written 15.9 years ago by
Germain Paimparay
▴ 10
0
votes
2
replies
1.3k
views
Tigre Package question 3
Microarray
impute
PROcess
convert
mmgmos
puma
tigre
trigger
Microarray
impute
PROcess
updated 10.2 years ago by
Solanki, Anisha
▴ 60 • written 10.2 years ago by
Antti Honkela
▴ 50
0
votes
2
replies
1.2k
views
Memory error in Mac OS X Aqua GUI v1.01 with cluster package functions
GUI
trigger
GUI
trigger
updated 19.2 years ago by
James W. MacDonald
65k • written 19.2 years ago by
Betty Gilbert
▴ 50
0
votes
2
replies
1.2k
views
memory limit
CGH
trigger
CGH
trigger
updated 13.6 years ago by
Steve Lianoglou
★ 13k • written 13.6 years ago by
Noemi Andor
▴ 100
0
votes
5
replies
1.2k
views
intermittent oddity in rtracklayer track names
trigger
trigger
updated 13.5 years ago by
Michael Lawrence
★ 11k • written 13.5 years ago by
Paul Shannon
★ 1.1k
0
votes
1
reply
1.2k
views
Affy. memory allocation trouble!
cdf
probe
trigger
cdf
probe
trigger
updated 21.4 years ago by
rgentleman
★ 5.5k • written 21.4 years ago by
Jens Vilstrup Johansen
▴ 20
0
votes
1
reply
1.1k
views
FYI from apple employee RE: [R] Memory error in Mac OS X
GUI
trigger
GUI
trigger
updated 19.0 years ago by
stefano iacus
▴ 430 • written 19.0 years ago by
David Williamson
▴ 10
0
votes
2
replies
1.1k
views
Configuration of memory usage
PROcess
trigger
PROcess
trigger
updated 19.3 years ago by
Peter Dalgaard
▴ 20 • written 19.3 years ago by
Tae-Hoon Chung
▴ 180
0
votes
1
reply
1.1k
views
FYI from apple employee RE: [R] Memory error in Mac OS X Aqua GUI v1.01 with cluster
GUI
trigger
GUI
trigger
updated 19.2 years ago by
stefano iacus
▴ 430 • written 19.2 years ago by
Betty Gilbert
▴ 50
1
vote
1
reply
1.0k
views
trigger package fails at parallalization - Transcriptional Regulatory Inference from Genetics of ExpRession
trigger
parallel
processing
multicore
updated 9.5 years ago by
Valerie Obenchain
★ 6.8k • written 9.5 years ago by
affennacken
• 0
0
votes
0
replies
1.0k
views
mean vs median of pixel values within spot mask wasRe: something weird with read.maimages and .gpr files
limma
trigger
limma
trigger
19.2 years ago
Pita
▴ 120
0
votes
0
replies
950
views
Fwd: rTANDEM package -- An R encapsulation of the X!Tandem algorithm
Proteomics
trigger
rTANDEM
Proteomics
trigger
rTANDEM
11.4 years ago
Frederic Fournier
▴ 40
0
votes
0
replies
927
views
Illumina BeadArray Annotation
Annotation
Cancer
lumiMouseV1
lumi
trigger
Annotation
Cancer
lumiMouseV1
lumi
trigger
16.9 years ago
Simon Lin
▴ 270
15 results • Page
1 of 1
Recent ...
Replies
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
You cannot correct for technical variability due to batch if samples are nested in batch. The technical and biological differences are comp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
James W. MacDonald
65k
You will need to show some reproducible code for anybody to track this down. Please note that `DESeq2` has been used by thousands of people…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
Alexandre
• 0
My code for the sessionInfo() . If the pictures are too big, I will downsize them. THank you again for reading my post ! ```r > sessionInf…
Comment: Reproducibility issue with scran together with lapply and BiocParallel
by
ATpoint
★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Votes
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
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