Bioconductor Tweedeseq

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tweedeseq differential expression

updated 5.6 years ago by Robert Castelo ★ 3.0k • written 5.6 years ago by vrehaman • 0

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943

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tweedeseq

8.4 years ago keever1 • 0

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762

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tweeDEseq tweeDEseq

updated 10.1 years ago by Gonzalez Ruiz, Juan Ramon ▴ 20 • written 10.1 years ago by Ryan C. Thompson 7.8k

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edgeR tweeDEseq edgeR tweeDEseq

10.1 years ago Gonzalez Ruiz, Juan Ramon ▴ 20

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1.5k

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Normalization edgeR tweeDEseq Normalization edgeR tweeDEseq

updated 11.6 years ago by Robert Castelo ★ 3.0k • written 11.6 years ago by Sermsawat Tunlaya-anukit ▴ 90

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Answer: ukb Chromosomal position information was converted into SNPS by James W. MacDonald 63k

In my work, we almost always convert RSIDs to chr:pos because the former is ambiguous and changing whereas the latter is not. Which is like…

Comment: T.fit function of maSigPro returns error message by hanna.g • 0

Addition to the issue above: the T.fit function works only when choosing the step.method = "forward", for whatever reason. Maybe this clue …

Answer: Deseq2, enrichGO and ensembl ID by James W. MacDonald 63k

1. There isn't a keytype alternative. You need the gene IDs. 2. Convert the `rownames` of your 'se' object, or the `rownames` of your `D…

Comment: Doubts regarding Pathview by loyedbend2811 • 0

I thoroughly enjoyed reading your essay, and it was quite beneficial to me. Please join me in [monopoly online][1] if you have the time. …

Comment: ukb Chromosomal position information was converted into SNPS by wenbo • 0

Hi, I downloaded uk biobank data, but I don't know how to use R to convert chromosome position information to rs

Votes

Answer: MDS plot edgeR

A: legend with gradient in ComplexHeatmap

Comment: comparing contrasts in edger/lima using makeContrasts function

Answer: comparing contrasts in edger/lima using makeContrasts function

Answer: Differential expression analysis with only FPKM matrix available from total newb

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