Biostar Twochannel

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819

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limma microarray design matrix twochannel

updated 4.6 years ago by Gordon Smyth 47k • written 4.6 years ago by rubi ▴ 110

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868

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arrayexpress twochannel microarray

5.4 years ago Andy91 ▴ 60

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1.2k

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Limma limma design matrix agilent twochannel

7.1 years ago pm2015 • 0

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1.5k

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agilent limma twochannel microarray

updated 7.5 years ago by Gordon Smyth 47k • written 7.5 years ago by pm2015 • 0

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1.8k

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marray agilent twochannel normalization limma

updated 8.2 years ago by Gordon Smyth 47k • written 8.2 years ago by Andrea Grilli ▴ 240

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2.5k

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wgcna twochannel onechannel

updated 8.4 years ago by Peter Langfelder ★ 2.7k • written 8.4 years ago by jeiroje ▴ 20

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aCGH Microarray TwoChannel Cancer limma aCGH snapCGH aCGH Microarray TwoChannel Cancer

updated 13.9 years ago by Wolfgang Raffelsberger ▴ 160 • written 13.9 years ago by Ramon Diaz ★ 1.1k

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3.0k

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Microarray OneChannel TwoChannel DataImport bridge GEOquery Microarray OneChannel bridge

updated 15.4 years ago by Sean Davis 21k • written 15.4 years ago by Wittner, Ben ▴ 290

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907

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Microarray OneChannel TwoChannel DifferentialExpression Preprocessing QualityControl affy

15.8 years ago Amin Moghaddasi ▴ 130

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Comment: Time-course, comparison of two groups by boczniak767 ▴ 720

Thank you @gordon-smyth . There will be three replicates of each time-series (line x condition). Is it possible to use spline approach and…

Comment: Weird dispersion and volcano plots in DEA with paired samples by lara • 0

@mikelove do you mean to color `Pair` with different colors? In our case, we have almost 200 pairs so it's hard to visualize them by colors…

Answer: Time-course, comparison of two groups by Gordon Smyth 47k

edgeR allows any number of explanatory factors, so you can have time-series for any number of treatments. If you have replicates, then I w…

Comment: different number of DEG because of outliers by Pedro Baldoni ▴ 30

The function `catchKallisto` in edgeR reads in the output from kallisto and estimates the mapping ambiguity overdispersion similarly

Comment: How to compute(calculate) rlog and vst provided from DESeq2 by tstpp • 0

Thank you for your kind reply! I try to understand them.

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C: deseq2 normalized data with heatmap

A: deseq2 normalized data with heatmap

Postdoc at EMBL: spatial and single-cell computational biology for precision oncology, based in Heidelberg, Germany

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