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twochannel
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5
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Limma Design Matrix for two channel agilent arrays (direct experimental design)
Limma
limma design matrix
agilent
twochannel
7.0 years ago
pm2015
• 0
3
votes
8
replies
763
views
Design matrix for a two-color experimental design testing for time effect on 3 treated cell-lines, each with its own time=0 control
limma
microarray
design matrix
twochannel
updated 4.5 years ago by
Gordon Smyth
47k • written 4.5 years ago by
rubi
▴ 110
3
votes
1
reply
2.5k
views
WGCNA: single channel microarray, one categorical covariate, how to apply it?
wgcna
twochannel
onechannel
updated 8.2 years ago by
Peter Langfelder
★ 2.7k • written 8.2 years ago by
jeiroje
▴ 20
3
votes
9
replies
1.4k
views
Single channel analysis of two-color agilent array using limma
agilent
limma
twochannel
microarray
updated 7.4 years ago by
Gordon Smyth
47k • written 7.4 years ago by
pm2015
• 0
1
vote
2
replies
1.8k
views
summarization for G4110B two colors agilent array: how to?
marray
agilent
twochannel
normalization
limma
updated 8.1 years ago by
Gordon Smyth
47k • written 8.1 years ago by
Andrea Grilli
▴ 240
0
votes
1
reply
836
views
Downloading Twochannel microarray data from ArrayExpress
arrayexpress
twochannel
microarray
5.3 years ago
Andy91
▴ 60
0
votes
1
reply
874
views
read.maimages problem under sun ?
Microarray
OneChannel
TwoChannel
DifferentialExpression
Preprocessing
QualityControl
affy
15.7 years ago
Amin Moghaddasi
▴ 130
0
votes
2
replies
3.0k
views
failure in GDS2eSet() in package GEOquery
Microarray
OneChannel
TwoChannel
DataImport
bridge
GEOquery
Microarray
OneChannel
bridge
updated 15.2 years ago by
Sean Davis
21k • written 15.2 years ago by
Wittner, Ben
▴ 290
0
votes
4
replies
1.1k
views
snapCGH fails in runBioHMM
aCGH
Microarray
TwoChannel
Cancer
limma
aCGH
snapCGH
aCGH
Microarray
TwoChannel
Cancer
updated 13.7 years ago by
Wolfgang Raffelsberger
▴ 160 • written 13.7 years ago by
Ramon Diaz
★ 1.1k
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Comment: Not able to download recount3 data
by
Niveditha
▴ 10
Not sure if this is a issue for which I need to create a ticket in the github link provided in the previous comment. Request you to confirm
Comment: Not able to download recount3 data
by
Niveditha
▴ 10
CURL command - curl https://www.sciserver.org/public-data/recount3/data/human/homes_index CURL command Works in the system with the follow…
Comment: Mutect version, matched normal and manual curation in PureCN
by
Ken C
• 0
Hi Markus, Thanks for your previous help. I now have a particular question that I believe is related to manual curation of PureCN results,…
Comment: TPP2D - multicore computing for bootstrapNullAlternativeModel(...)
by
Tobias
▴ 40
I found a way that worked on my MacBook Pro and also on a Linux (Debian 10): ``` ##### multicore version ##### library(BiocParallel) null_…
Answer: TPP2D - multicore computing for bootstrapNullAlternativeModel(...)
by
James W. MacDonald
62k
You are already halfway to figuring this out for yourself. Here's how I would proceed. The argument 'BPPARAM' says something about 'opti…
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C: SGSeq: moving toward diffex from SGSeq analysis
C: SGSeq: moving toward diffex from SGSeq analysis
A: SGSeq: moving toward diffex from SGSeq analysis
A: SGSeq: moving toward diffex from SGSeq analysis
SGSeq: moving toward diffex from SGSeq analysis
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