Showing : txdb.hsapiens.ucsc.hg19.knowngene • reset
5
votes
15
replies
3.3k
views
nearest genes using TxDb.Hsapiens.UCSC.hg19
txdb.hsapiens.ucsc.hg19.knowngene ChIPpeakAnno
updated 7.9 years ago by ★ 4.3k • written 7.9 years ago by ▴ 140
3
votes
4
replies
1.4k
views
No annotation for single SNPs
variantannotation SNPs txdb.hsapiens.ucsc.hg19.knowngene ucsc
updated 6.8 years ago by ★ 6.8k • written 6.8 years ago by • 0
0
votes
2
replies
1.0k
views
GenomicFeatures coordinates UCSC
genomicfeatures txdb.hsapiens.ucsc.hg19.knowngene
8.0 years ago ribioinfo ▴ 100
2
votes
16
replies
4.1k
views
TxDb annotations for human chrM
GenomicFeatures TxDb.Hsapiens.UCSC.hg19.knownGene annotation
9.2 years ago Robert Castelo ★ 3.2k
7
votes
4
replies
3.5k
views
PDCD1 missing from TxDb.Hsapiens.UCSC.hg38.knownGene?
txdb txdb.hsapiens.ucsc.hg19.knowngene txdb.hsapiens.ucsc.hg38.knowngene org.hs.eg.db annotation
8.0 years ago enricoferrero ▴ 660
6
votes
4
replies
2.0k
views
unlist a exons GRangeslist object and add a gene name column
granges grangeslist txdb.hsapiens.ucsc.hg19.knowngene
updated 6.4 years ago by 16k • written 6.4 years ago by ▴ 190
0
votes
2
replies
1.5k
views
locateVariants function does not find an annotation for the locus
locatevariants txdb.hsapiens.ucsc.hg19.knowngene variantannotation
6.7 years ago Aleksandra • 0
0
votes
2
replies
1.3k
views
SNPs in multiple locations
txdb.hsapiens.ucsc.hg19.knowngene ucsc annotation locatevariants variantannotation
updated 6.8 years ago by ★ 6.8k • written 6.8 years ago by • 0
3
votes
10
replies
1.8k
views
POU5F1(OCT4) /ENTREZID: 5460 is not in the TxDb.Hsapiens.UCSC.hg19.knownGene
txdb.hsapiens.ucsc.hg19.knowngene
updated 6.6 years ago by ▴ 70 • written 6.6 years ago by ▴ 190
0
votes
1
reply
1.1k
views
problem with TxDb.Hsapiens.UCSC.hg19.knownGene
TxDb.Hsapiens.UCSC.hg19.knownGene
updated 6.6 years ago by 65k • written 6.6 years ago by • 0
0
votes
2
replies
1.5k
views
Missing genes from TxDb.Hsapiens.UCSC.hg19.knownGene
txdb txdb.hsapiens.ucsc.hg19.knowngene gviz
updated 6.5 years ago by 65k • written 6.5 years ago by ▴ 10
2
votes
3
replies
1.4k
views
A bug of "seqlevels<-" on TxDb
txdb.hsapiens.ucsc.hg19.knowngene seqlevels bugs
updated 7.3 years ago by 16k • written 7.4 years ago by ▴ 30
2
votes
5
replies
2.0k
views
TxDb.Hsapiens.UCSC.hg19.knownGene Exons that are not part of any gene
TxDb.Hsapiens.UCSC.hg19.knownGene genomicfeatures annotation
8.2 years ago Aliaksei Holik ▴ 350
1
vote
10
replies
2.0k
views
UCSC web service API
txdb.hsapiens.ucsc.hg19.knowngene rtracklayer
updated 7.8 years ago by 25k • written 7.8 years ago by ▴ 290
3
votes
3
replies
1.3k
views
Genes found on particular chromosome using two methods in TxDb.Hsapiens.UCSC.hg19.knownGene were not identical
txdb.hsapiens.ucsc.hg19.knowngene txdb
updated 7.7 years ago by 25k • written 7.7 years ago by ▴ 450
2
votes
2
replies
2.4k
views
Get the genomic coordinates for the coding sequence (CDS) of a gene
genomicfeatures txdb.hsapiens.ucsc.hg19.knowngene cds
7.6 years ago madsheilskov ▴ 10
2
votes
6
replies
2.8k
views
TxDb.Hsapiens.UCSC.hg19.knownGene misannotation of a gene
txdb.hsapiens.ucsc.hg19.knowngene
updated 7.5 years ago by 65k • written 7.5 years ago by ▴ 190
1
vote
1
reply
2.5k
views
Use of org.Hs.eg.db and TxDb.Hsapiens.UCSC.hg19.knownGene
TxDb.Hsapiens.UCSC.hg19.knownGene org.hs.eg.db
updated 7.5 years ago by 6.7k • written 7.5 years ago by • 0
0
votes
1
reply
1.1k
views
How to extract BOTH exon and matched transcript ID from TxDb.Hsapiens.UCSC.hg19.knownGene database?
txdb.hsapiens.ucsc.hg19.knowngene
updated 6.1 years ago by 65k • written 6.1 years ago by • 0
2
votes
4
replies
1.4k
views
Problem with extracting information about exons from TxDb.Hsapiens.UCSC.hg19.knownGene: incorrect number of exons and overlapping exons
txdb txdb.hsapiens.ucsc.hg19.knowngene granges exons ucsc
updated 5.3 years ago by 65k • written 5.3 years ago by ▴ 10
0
votes
0
replies
423
views
Make custom Txdb class objects from Txdb
GenomicFeatures karyoploteR TxDb.Hsapiens.UCSC.hg19.knownGene
12 months ago • updated 11 months ago Shreyash • 0
0
votes
1
reply
2.0k
views
Difference in TxDb.Hsapiens.UCSC.hg19.knownGene and UCSC knownGene
annotate exons txdb.hsapiens.ucsc.hg19.knowngene
8.8 years ago adnan.niazi • 0
12
votes
2
replies
1.3k
views
`TxDb.Hsapiens.UCSC.hg19.knownGene` and `EnsDb.Hsapiens.v75` can't be installed anymore
EnsDb.Hsapiens.v75 TxDb.Hsapiens.UCSC.hg19.knownGene
3.3 years ago Batool ▴ 370
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