Bioconductor Txdb.hsapiens.ucsc.hg38.knowngene

Showing : txdb.hsapiens.ucsc.hg38.knowngene • reset

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3.7k

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install TxDb.Hsapiens.UCSC.hg38.knownGene

2.1 years ago Theresa ▴ 20

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3.5k

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txdb txdb.hsapiens.ucsc.hg19.knowngene txdb.hsapiens.ucsc.hg38.knowngene org.hs.eg.db annotation

8.0 years ago enricoferrero ▴ 660

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2.8k

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txdb.hsapiens.ucsc.hg38.knowngene org.hs.eg.db

updated 6.4 years ago by Simon Anders ★ 3.7k • written 6.4 years ago by Mark Dunning ★ 1.1k

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2.7k

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TxDb.Hsapiens.UCSC.hg38.knownGene TxDb.Mmusculus.UCSC.mm10.ensGene

updated 4.5 years ago by James W. MacDonald 65k • written 4.5 years ago by Aditya ▴ 160

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2.6k

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annotation txdb.hsapiens.ucsc.hg38.knowngene bug

7.5 years ago shilin.zhao ▴ 40

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2.0k

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TxDb.Hsapiens.UCSC.hg38.knownGene subset TxDb object

4.9 years ago Ruichao.Zeng ▴ 10

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1.6k

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TxDb.Hsapiens.UCSC.hg38.knownGene

updated 3.2 years ago by James W. MacDonald 65k • written 3.2 years ago by lukijanczukpawel • 0

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1.4k

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MetID TxDB.Hsapiens.UCSC.hg38.knownGene locateVariants GenomicFeatures VariantAnnotation

13 months ago davidhillis • 0

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1.3k

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s4vectors bumphunter txdb.hsapiens.ucsc.hg38.knowngene

6.6 years ago Leonardo Collado Torres ★ 1.0k

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1.3k

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TxDb.Hsapiens.UCSC.hg38.knownGene

updated 2.3 years ago by Hervé Pagès 16k • written 2.4 years ago by BioEpi • 0

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999

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TxDb annotation TxDb.Hsapiens.UCSC.hg38.knownGene

updated 4.2 years ago by shepherl 3.8k • written 4.2 years ago by bernatgel ▴ 150

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975

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annotation genome hg38 TxDb.Hsapiens.UCSC.hg38.knownGene BSgenome.Hsapiens.UCSC.hg38

updated 4.2 years ago by kayla.interdonato ▴ 160 • written 4.2 years ago by jam526 • 0

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804

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HLA TxDb.Hsapiens.UCSC.hg38.knownGene

updated 4.3 years ago by kayla.interdonato ▴ 160 • written 4.3 years ago by Kamil Slowikowski ▴ 30

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643

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microRNA TxDb.Hsapiens.UCSC.hg38.knownGene

15 months ago Lluís Revilla Sancho ▴ 730

14 results • Page 1 of 1

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Comment: Input Question for deseq.r by ATpoint ★ 4.0k

It is unclear what "deseq.r" is. It is not part of DESeq2, and almost certainly no part of RSeqAn. Please add details, and keep in mind tha…

Answer: DESEQ2 output gives multiple groups when only 2 groups are present by ATpoint ★ 4.0k

In the first PCA plot there is almost certainly some hidden character like whitespaces in the column from colData that encodes this group. …

Answer: A ComBat-seq issue: the covariates are confounded by ATpoint ★ 4.0k

```r > table(batch, group) group batch egfr gfp her2 1 0 12 5 2 6 6 0 ``` All of her2 is batch2, all of egfr i…

Comment: DESeq2 setting significant p-value by Dev • 0

after running DESeq2 does it sort the value on the basis of pvalue, or anything, or does it give the data back in the input format I have …

Comment: DESeq filtering specific to contrasts by Carlin95 • 0

But wouldn't this result in a different gene set for each analysis stratification? How can you then compare if maybe gene x comes up in Tim…

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Comment: Reading huge bismark coverage files using bbseq::read.bismark

Answer: Reading huge bismark coverage files using bbseq::read.bismark

Answer: How many of my genes from my gene list are in each KEGG pathway?

Comment: Light difference when using coef vs omit a group when compare 3 groups.

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