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Showing :
ucsctrack
•
reset
3
votes
5
replies
1.7k
views
UcscTrack and BED without headers
gviz
BED
Ucsc
UcscTrack
8.3 years ago
Andy91
▴ 60
2
votes
2
replies
1.2k
views
Can't display protein domain data from UCSC table unipDomain using Gviz
Gviz
protein
visualization
UcscTrack
protein domains
updated 3.6 years ago by
James W. MacDonald
65k • written 3.6 years ago by
paul.jaschke
▴ 10
2
votes
4
replies
2.7k
views
Error using Gviz and BiomartGeneRegionTrack, version problem?
Gviz-package
biomart
plottracks
ucsctrack
stickleback
updated 7.1 years ago by
florian.hahne@novartis.com
★ 1.6k • written 7.1 years ago by
br
• 0
1
vote
4
replies
2.6k
views
Giemsa stain annotation/nomenclature for UCSC cytoband tracks
ucsc
ucsctrack
ggbio
Gviz
hg19
updated 7.2 years ago by
maximilianh
▴ 10 • written 7.2 years ago by
metamaden
▴ 10
1
vote
4
replies
4.2k
views
How to display gene symbols in UCSC Track in Gviz
gviz
ucsctrack
hgnc
updated 7.0 years ago by
James W. MacDonald
65k • written 7.0 years ago by
Greg G.
• 0
1
vote
1
reply
984
views
Gviz: UcscTrack() getting error when there is no genes in the region
givz
UcscTrack
7.6 years ago
shuoguo
▴ 10
0
votes
0
replies
1.0k
views
gviz UcscTrack label with HGNC gene symbol
gviz
ucsctrack
genesymbols
7.5 years ago
dmb107
• 0
0
votes
0
replies
909
views
Gviz: Is it possible to plot coding (thick boxes) and non-coding (thin boxes) regions for an UcscTrack?
Gviz
gene names
thinBoxFeature
UCSCtrack
7.7 years ago
angela.heck
• 0
0
votes
2
replies
1.2k
views
How to get UCSC url when use rtracklayer, contain the track in the url ,it may be very useful
rtracklayer
UCSC
ucsctrack
updated 6.4 years ago by
James W. MacDonald
65k • written 6.4 years ago by
zhangqshxxzz
• 0
9 results • Page
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Replies
Comment: get BM error
by
James W. MacDonald
65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Comment: get BM error
by
Fara
• 0
Thank you for your response. The primary reason for translating Ensembl IDs into Entrez Gene IDs is to perform KEGG (Kyoto Encyclopedia of…
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function
by
James W. MacDonald
65k
That's weird. I don't have any problem at all generating the `OrgDb` on my box. How big is the gene2pubmed.gz file? I get this: ``` gzip -…
Answer: get BM error
by
James W. MacDonald
65k
The genes you present are orthologous mappings from D. rerio to other teleost fishes, so it is probably going to be difficult to map to NCB…
Answer: How to retrieve gene ontology GO class from gene list?
by
James W. MacDonald
65k
You can also use a combination of the `org.Hs.eg.db` and `GO.db` packages. ``` > library(GO.db) > library(org.Hs.eg.db) > go <- m…
Votes
Answer: get BM error
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
Comment: Different Shrunk Log2FC according with reference
Reproducibility issue with scran together with lapply and BiocParallel
C: SGSeq: moving toward diffex from SGSeq analysis
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