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Showing :
ucsctrack
•
reset
3
votes
5
replies
1.7k
views
UcscTrack and BED without headers
gviz
BED
Ucsc
UcscTrack
8.3 years ago
Andy91
▴ 60
2
votes
4
replies
2.7k
views
Error using Gviz and BiomartGeneRegionTrack, version problem?
Gviz-package
biomart
plottracks
ucsctrack
stickleback
updated 7.1 years ago by
florian.hahne@novartis.com
★ 1.6k • written 7.1 years ago by
br
• 0
1
vote
4
replies
2.6k
views
Giemsa stain annotation/nomenclature for UCSC cytoband tracks
ucsc
ucsctrack
ggbio
Gviz
hg19
updated 7.2 years ago by
maximilianh
▴ 10 • written 7.2 years ago by
metamaden
▴ 10
2
votes
2
replies
1.2k
views
Can't display protein domain data from UCSC table unipDomain using Gviz
Gviz
protein
visualization
UcscTrack
protein domains
updated 3.6 years ago by
James W. MacDonald
65k • written 3.6 years ago by
paul.jaschke
▴ 10
1
vote
1
reply
984
views
Gviz: UcscTrack() getting error when there is no genes in the region
givz
UcscTrack
7.6 years ago
shuoguo
▴ 10
1
vote
4
replies
4.2k
views
How to display gene symbols in UCSC Track in Gviz
gviz
ucsctrack
hgnc
updated 7.0 years ago by
James W. MacDonald
65k • written 7.0 years ago by
Greg G.
• 0
0
votes
0
replies
909
views
Gviz: Is it possible to plot coding (thick boxes) and non-coding (thin boxes) regions for an UcscTrack?
Gviz
gene names
thinBoxFeature
UCSCtrack
7.7 years ago
angela.heck
• 0
0
votes
2
replies
1.2k
views
How to get UCSC url when use rtracklayer, contain the track in the url ,it may be very useful
rtracklayer
UCSC
ucsctrack
updated 6.4 years ago by
James W. MacDonald
65k • written 6.4 years ago by
zhangqshxxzz
• 0
0
votes
0
replies
1.0k
views
gviz UcscTrack label with HGNC gene symbol
gviz
ucsctrack
genesymbols
7.5 years ago
dmb107
• 0
9 results • Page
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Comment: minfi::read.metharray.exp
by
clacarion
• 0
I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…
Comment: minfi::read.metharray.exp
by
clacarion
• 0
Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…
Answer: List of Deprecated Packages for Bioc3.19
by
shepherl
3.8k
singleCellTK has been fixed and will remain in Bioconductor
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
Yes, I'm working only with genes from terpenoids pathway (14 genes), so I can't use enrichGO? Can you recommend a package or something like…
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
Your awnser at Cannabis orgDb solve my problems using enrichGO by far. I'm underdegree biotechnology student, and I learning bioinformatic…
Votes
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Comment: Trying to use enrichGO
Answer: Cannabis OrgDb
DESeq2: How to find out how well the model fits the data?
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