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uniprot
•
reset
4
votes
1
reply
1.6k
views
Converting Protein Accessions Into Protein Symbols
uniprot
uniprot.ws
8.2 years ago • updated 8.1 years ago
Dario Strbenac
★ 1.5k
4
votes
2
replies
844
views
drawProteins from Uniprot entry (missing chain information)
drawProteins
uniprot
updated 5.2 years ago by
James W. MacDonald
65k • written 5.2 years ago by
mblango
• 0
3
votes
11
replies
4.9k
views
GO enrichment analysis on Solanum lycopersicum proteomics dataset (UniProt IDs)
clusterProfiler
AnnotationHub
GO
uniprot
updated 11 weeks ago by
Guido Hooiveld
★ 3.9k • written 3.2 years ago by
Alberto
• 0
2
votes
5
replies
3.3k
views
UniprotKB AC/ID to Entrez ID Conversion
ID
Uniprot
EntrezID
23 months ago
tom.kloter
• 0
2
votes
14
replies
3.9k
views
Unimart not available in 2015?
biomart
uniprot
unimart
8.4 years ago
john
▴ 10
2
votes
2
replies
1.3k
views
Is there a package that has Uniprot protein descriptions?
uniprot.ws
uniprot
uniprot accessions
software error
updated 8.4 years ago by
James W. MacDonald
65k • written 8.4 years ago by
john
▴ 10
2
votes
4
replies
3.0k
views
UniProt.ws version 2.10.2
uniprot.ws
subcellular location
uniprot
8.2 years ago
DHS
• 0
2
votes
3
replies
1.0k
views
Uniprot and UniProt.ws
Uniprot
Annotation
Identifiers
5.0 years ago
Juliet Hannah
▴ 360
1
vote
4
replies
3.8k
views
problem with retrieving UniProt annotation data
uniprot.ws
uniprot
updated 9.2 years ago by
Marc Carlson
★ 7.2k • written 9.2 years ago by
Guido Hooiveld
★ 3.9k
1
vote
7
replies
1.9k
views
UniProt.ws report 1:many mappings in a single row
uniprot.ws
UniProt
annotation
7.4 years ago
l.nilse
• 0
1
vote
1
reply
900
views
UniProt.ws - Speeding up select() for data retrieval
UniProt.ws
UniProt
updated 3.4 years ago by
James W. MacDonald
65k • written 3.4 years ago by
JavierM
• 0
1
vote
4
replies
1.1k
views
UniProt.ws non-functional or abandoned?
uniprot.ws
uniprot
uniprot accessions
updated 5.4 years ago by
James W. MacDonald
65k • written 5.4 years ago by
balin
• 0
0
votes
1
reply
1.1k
views
UniProt.ws - single database for two species
uniprot.ws
uniprot
updated 6.5 years ago by
James W. MacDonald
65k • written 6.5 years ago by
l.nilse
• 0
0
votes
2
replies
1.1k
views
Error retrieving data with biomaRt
biomart
r
getbm
uniprot
6.2 years ago
lluex.rova
• 0
0
votes
2
replies
1.5k
views
Missing ensembl_ids in biomaRt uniprot query
biomaRt
uniprot
ensembl
updated 9.4 years ago by
me
• 0 • written 9.4 years ago by
António Miguel de Jesus Domingues
▴ 490
0
votes
3
replies
1.4k
views
Anotations Score of uniprot. ws
uniprot.ws
uniprot
updated 8.4 years ago by
James W. MacDonald
65k • written 8.4 years ago by
cerikahp
• 0
0
votes
6
replies
2.3k
views
converting UniProt to SGD ids using UniProt.wd
uniprot.ws
uniprot
ensembl
updated 9.3 years ago by
Marc Carlson
★ 7.2k • written 9.3 years ago by
Joseph Barry
▴ 160
0
votes
3
replies
1.1k
views
Accessing feature data of a Malus domestica Nimblegen microarray
nimblegen
Biomart
Uniprot
updated 7.4 years ago by
Gordon Smyth
50k • written 7.4 years ago by
theobroma22
▴ 10
0
votes
1
reply
1.6k
views
org.Mm.eg.db UNIPROT missing values
Annotation
mouse
UNIPROT
updated 6.6 years ago by
Mike Smith
★ 6.5k • written 6.6 years ago by
julie.chevalier
• 0
19 results • Page
1 of 1
Recent ...
Replies
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
Alexandre
• 0
Hello James, Thank you for your answer and precise exemple ! It is disappointing but makes sense. Best, Alexandre
Comment: How to retrieve gene ontology GO class from gene list?
by
James W. MacDonald
65k
Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…
Comment: How to retrieve gene ontology GO class from gene list?
by
bandconductor
• 0
Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
Alexandre
• 0
Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…
Votes
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
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