Showing : update • reset
5
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4
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5.7k
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Problem using BiocUpgrade
update bioclite
updated 10.0 years ago by ★ 8.2k • written 10.0 years ago by • 0
1
vote
3
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2.4k
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update all/some/none how to set default to "update all"
biocLite update all default ask
updated 5.7 years ago by ▴ 30 • written 5.7 years ago by ▴ 10
1
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3
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1.7k
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How to update the data in an experimental data package
experimentdata update
updated 10.0 years ago by 1.6k • written 10.0 years ago by ▴ 10
1
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2
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6.7k
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Can't update DESeq2 to most updated version
deseq2 update
9.8 years ago zshao1 • 0
1
vote
5
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3.3k
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Updating Out of Date BiocManager Packages
biocmanager valid update packages
updated 4.4 years ago by ★ 4.0k • written 4.4 years ago by • 0
0
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2
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2.1k
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Having trouble updating Bioconductor
installation update
updated 7.7 years ago by 67k • written 7.7 years ago by • 0
0
votes
1
reply
1.3k
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PANTHER.db update to the last version of PANTHERdb database?
PANTHER.db update annotation go
updated 5.7 years ago by 25k • written 5.7 years ago by • 0
0
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2
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794
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New release or do I submit as a new package if package update includes a new function
update new release version
5.1 years ago zzrickli • 0
0
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4
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1.5k
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Difficulties updating a package on Bioconductor
update Omixer maintainer
updated 3.9 years ago by 4.0k • written 3.9 years ago by • 0
0
votes
1
reply
659
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Updated package is not the version specified on the homepage
Versions Update BindingSiteFinder
updated 21 months ago by ★ 6.5k • written 21 months ago by • 0
0
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0
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975
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HowTo: install just html help on top of existing packages
bioclite package installation update
7.6 years ago Malcolm Cook ★ 1.6k
3
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0
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901
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News: Support Site Updates
support.bioconductor.org update News
5.8 years ago shepherl 4.0k
0
votes
3
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1.5k
views
Cant update old packages
software error packages update
updated 4.2 years ago by 67k • written 4.2 years ago by • 0
8
votes
4
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7.2k
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Can't upgrade to Bioconductor 3.3?
bioconductor biocupgrade upgrade update bioclite
8.4 years ago enricoferrero ▴ 660
14 results • Page 1 of 1
Recent ...
Replies
Comment: Mostly increased counts in differentially accessible peaks using DESeq2 by Ricardo Iván • 0
Hi Michael, Thanks for your reply. After reviewing the PCAs, maybe the issue that despite the replicates looking similar, there is still a…
Comment: Using Normalized Counts in DESeq2 by Michael Love 42k
Also, just to add, there are many dozens of posts on this topic of DESeq2 applied to TCGA counts, normalized or other. Recommend google sea…
Answer: Using Normalized Counts in DESeq2 by ATpoint ★ 4.5k
TCGA raw counts can be obtained for example using the TCGAbiolinks or recount packages.
Comment: How to reverse complement some elements of a DNAStringSet by Christine Jones • 0
Fantastic, thank you
Comment: When running contrasts, does it use normalized read counts? by Katherine • 0
Ok, so the comment I was given where they said DeSeq2 should be with normalized counts is incorrect. the ```normalized_counts``` variable …
Votes
Answer: When running contrasts, does it use normalized read counts?
Comment: featureCounts fails to load annotation file
Answer: How to reverse complement some elements of a DNAStringSet
Answer: KEGGgraph result difference
Answer: What should be the normalization protocol for RNA seq data for WGCNA?
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