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Can't upgrade to Bioconductor 3.3?
bioconductor
biocupgrade
upgrade
update
bioclite
8.0 years ago
enricoferrero
▴ 660
5
votes
4
replies
5.5k
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Problem using BiocUpgrade
update
bioclite
updated 9.5 years ago by
Dan Tenenbaum
★ 8.2k • written 9.5 years ago by
dianmante
• 0
3
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0
replies
788
views
News:
Support Site Updates
support.bioconductor.org
update
News
5.3 years ago
shepherl
3.8k
1
vote
5
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3.0k
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Updating Out of Date BiocManager Packages
biocmanager
valid
update
packages
updated 3.9 years ago by
Kevin Blighe
★ 3.9k • written 3.9 years ago by
bs14ab
• 0
1
vote
3
replies
1.5k
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How to update the data in an experimental data package
experimentdata
update
updated 9.6 years ago by
Laurent Gatto
1.6k • written 9.6 years ago by
paul.theodor.pyl
▴ 10
1
vote
2
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6.5k
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Can't update DESeq2 to most updated version
deseq2
update
9.3 years ago
zshao1
• 0
1
vote
3
replies
2.0k
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update all/some/none how to set default to "update all"
biocLite
update
all
default
ask
updated 5.2 years ago by
Fischer-philipp
▴ 30 • written 5.2 years ago by
rgiannico
▴ 10
0
votes
2
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2.0k
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Having trouble updating Bioconductor
installation
update
updated 7.2 years ago by
James W. MacDonald
65k • written 7.2 years ago by
debg
• 0
0
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1
reply
1.1k
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PANTHER.db update to the last version of PANTHERdb database?
PANTHER.db
update
annotation
go
updated 5.2 years ago by
Martin Morgan
25k • written 5.2 years ago by
alfonsosaera
• 0
0
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1
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480
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Updated package is not the version specified on the homepage
Versions
Update
BindingSiteFinder
updated 15 months ago by
Mike Smith
★ 6.5k • written 15 months ago by
M.Klostermann
• 0
0
votes
2
replies
654
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New release or do I submit as a new package if package update includes a new function
update
new release
version
4.6 years ago
zzrickli
• 0
0
votes
3
replies
1.3k
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Cant update old packages
software error
packages
update
updated 3.8 years ago by
James W. MacDonald
65k • written 3.8 years ago by
bs14ab
• 0
0
votes
4
replies
1.2k
views
Difficulties updating a package on Bioconductor
update
Omixer
maintainer
updated 3.4 years ago by
shepherl
3.8k • written 3.4 years ago by
l.j.sinke
• 0
0
votes
0
replies
872
views
HowTo: install just html help on top of existing packages
bioclite
package installation
update
7.1 years ago
Malcolm Cook
★ 1.6k
14 results • Page
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Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel
by
Aaron Lun
★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge
by
shuwangxinze1996
• 0
Hello, I used 48 cpus and 320G of memory to run this program. My bam files size are 7-9G, wonder how much CPU and memory is enough? Thank …
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A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
Answer: How to retrieve gene ontology GO class from gene list?
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