Bioconductor Utr

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579

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plot color Gviz utr

2.7 years ago ginlucks • 0

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2.0k

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genomicfeatures annotation utr

updated 5.4 years ago by Hervé Pagès 16k • written 5.5 years ago by hxlei613 • 0

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1.2k

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Annotatr CDS Exon UTR

updated 5.8 years ago by rcavalca ▴ 140 • written 5.8 years ago by xie186 • 0

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844

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threeutrsbytranscript UTR

7.1 years ago Jvais2000 • 0

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dexseq promoter utr

updated 7.5 years ago by Alejandro Reyes ★ 1.9k • written 7.5 years ago by joan.hooper • 0

5 results • Page 1 of 1

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Comment: Can the limma package be applied to Log2 RUV-normalized data? by Shaimaa Gamal • 0

I see. Do you recommend a certain method to get norm.factors through calcNormFactors function espcially if the downstream analysis includes…

Comment: Can the limma package be applied to Log2 RUV-normalized data? by Gordon Smyth 49k

515 samples is certainly large enough.

Comment: Correct the batch effect in methylation analysis in R by kyj2226 • 0

Thank you for your kind response Gordon! :) Have a good time at the end of the year! Best, Yujin Kim

Comment: Agilent Microarray Gene Oncology analysis gone wrong by SamGG ▴ 320

Gordon said to let coef to its default value: topTable(fit, n=20)

Comment: Can the limma package be applied to Log2 RUV-normalized data? by Shaimaa Gamal • 0

Hi Gordon, On what basis we can determine whether the dataset is large or not? I am working on a dataset of 515 samples and 5440 genes. I w…

Votes

Comment: Can the limma package be applied to Log2 RUV-normalized data?

Answer: Correct the batch effect in methylation analysis in R

Comment: Why is DMRcate not available for Bioconductor version 3.18?

Answer: Correct the batch effect in methylation analysis in R

Awards • All

Scholar to Gordon Smyth 49k

Popular Question to Lluís Revilla Sancho ▴ 720

Popular Question to Frederik Ziebell ▴ 20