Bioconductor Vanillaice

Showing : vanillaice • reset

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990

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crlmm vanillaice

8.4 years ago Shi, Tao ▴ 720

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1.3k

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SNP6 crlmm vanillaice vanillaice crlmm cnv

updated 8.5 years ago by rscharpf • 0 • written 8.5 years ago by cafelumiere12 ▴ 20

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969

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SNP affy VanillaICE SNP affy VanillaICE

11.7 years ago Rob Scharpf ▴ 250

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1.0k

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Proteomics VanillaICE Proteomics VanillaICE

updated 12.1 years ago by Valerie Obenchain ★ 6.8k • written 12.1 years ago by Francesco Mancuso ▴ 110

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992

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Annotation Cancer VanillaICE crlmm Annotation Cancer VanillaICE crlmm

12.2 years ago Daniel Rico ▴ 110

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1.1k

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SNP Cancer graph oligo SNPchip oligoClasses VanillaICE crlmm SNP Cancer graph oligo

14.6 years ago Min-Han Tan ▴ 40

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1.3k

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Annotation Cancer Breast VanillaICE copynumber Annotation Cancer Breast VanillaICE

15.0 years ago Steven McKinney ▴ 310

7 results • Page 1 of 1

Recent ...

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Answer: tximport: Error in is(txi, "list") : argument "txi" is missing, with no default by James W. MacDonald 64k

The arguments for that function can be found in the help page (accessed using `?DESeqDataSetFromTximport`) ``` Usage: DESeqDataSet(s…

Answer: tximport: Error in is(txi, "list") : argument "txi" is missing, with no default by Michael Love 41k

argument txi is missing, with no default This means the function was expecting a named argument txi Check the man page for the funct…

Comment: Problem loading HDF5Array in R 4.3.2 by Sarah • 0

Thank you so much! This worked! It installed from source with no problem and after restarting my R session, everything loads properly now.…

Answer: bam or VCF files from GSE75010 by James W. MacDonald 64k

You must be confused. Those are expression arrays, not genotyping, so you cannot do a 'variant calling analysis', whatever you mean by that…

Comment: locateVariant from VariantAnnotation returns wrong results by James W. MacDonald 64k

You can also just stuff that 'z' object into an env and use that. ``` > cache <- new.env(parent = emptyenv()) > z <- intronsByTranscript(T…

Votes

Answer: tximport: Error in is(txi, "list") : argument "txi" is missing, with no default

Comment: Ensembl down???

Answer: Limma/DESeq2 for unbalanced nested design (paired samples)

Result from GSEA for non-model organism not as expected

Awards • All

Scholar to Mike Smith ★ 6.2k

Scholar to Hervé Pagès 16k