Bioconductor Vanillaice

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1.4k

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Annotation Cancer Breast VanillaICE copynumber Annotation Cancer Breast VanillaICE

15.0 years ago Steven McKinney ▴ 310

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1.3k

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SNP6 crlmm vanillaice vanillaice crlmm cnv

updated 8.6 years ago by rscharpf • 0 • written 8.6 years ago by cafelumiere12 ▴ 20

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SNP Cancer graph oligo SNPchip oligoClasses VanillaICE crlmm SNP Cancer graph oligo

14.6 years ago Min-Han Tan ▴ 40

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1.0k

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Proteomics VanillaICE Proteomics VanillaICE

updated 12.1 years ago by Valerie Obenchain ★ 6.8k • written 12.1 years ago by Francesco Mancuso ▴ 110

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999

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Annotation Cancer VanillaICE crlmm Annotation Cancer VanillaICE crlmm

12.2 years ago Daniel Rico ▴ 110

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996

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crlmm vanillaice

8.5 years ago Shi, Tao ▴ 720

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SNP affy VanillaICE SNP affy VanillaICE

11.7 years ago Rob Scharpf ▴ 250

7 results • Page 1 of 1

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Comment: Can the limma package be applied to Log2 RUV-normalized data? by Gordon Smyth 49k

515 samples is certainly large enough.

Comment: Correct the batch effect in methylation analysis in R by kyj2226 • 0

Thank you for your kind response Gordon! :) Have a good time at the end of the year! Best, Yujin Kim

Comment: Agilent Microarray Gene Oncology analysis gone wrong by SamGG ▴ 320

Gordon said to let coef to its default value: topTable(fit, n=20)

Comment: Can the limma package be applied to Log2 RUV-normalized data? by Shaimaa Gamal • 0

Hi Gordon, On what basis we can determine whether the dataset is large or not? I am working on a dataset of 515 samples and 5440 genes. I w…

Comment: Agilent Microarray Gene Oncology analysis gone wrong by samagbeyimodupe • 0

Thank you for the quick response. i ran the codes again and removed all the other arguments for eBayes except for fit. I ran the line of co…

Votes

Answer: Correct the batch effect in methylation analysis in R

Comment: Why is DMRcate not available for Bioconductor version 3.18?

Answer: Correct the batch effect in methylation analysis in R

Answer: enrichGOgradient color change

Answer: Filter genes by expression for voomLmFit

Awards • All

Scholar to Gordon Smyth 49k

Popular Question to Lluís Revilla Sancho ▴ 720

Popular Question to Frederik Ziebell ▴ 20