Biostar Vanillaice

Showing : vanillaice • reset

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1.1k

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SNP6 crlmm vanillaice vanillaice crlmm cnv

updated 7.7 years ago by rscharpf • 0 • written 7.7 years ago by cafelumiere12 ▴ 20

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1.1k

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Annotation Cancer Breast VanillaICE copynumber Annotation Cancer Breast VanillaICE

14.2 years ago Steven McKinney ▴ 310

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1.0k

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SNP Cancer graph oligo SNPchip oligoClasses VanillaICE crlmm SNP Cancer graph oligo

13.8 years ago Min-Han Tan ▴ 40

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776

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Annotation Cancer VanillaICE crlmm Annotation Cancer VanillaICE crlmm

11.4 years ago Daniel Rico ▴ 110

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845

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Proteomics VanillaICE Proteomics VanillaICE

updated 11.3 years ago by Valerie Obenchain ★ 6.7k • written 11.3 years ago by Francesco Mancuso ▴ 110

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819

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SNP affy VanillaICE SNP affy VanillaICE

10.9 years ago Rob Scharpf ▴ 250

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849

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crlmm vanillaice

7.6 years ago Shi, Tao ▴ 720

7 results • Page 1 of 1

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Comment: Which input file is used for DGEList in EgdeR? by mohammedtoufiq91 ▴ 10

Thank you @gordonsmyth My collaborator asked me to test this pipeline with `egdeR` package. We are interested at gene level analysis only…

Answer: Why in Bioconductor community people rarely upvote questions? by Gordon Smyth 47k

I think it is a good idea to start a discussion with correct information. Looking back through Bioconductor Support records, it is not at a…

Comment: How to identify top most variable genes from log2 normalized data? by Gordon Smyth 47k

Your code doesn't look right to me. I think you're using order() where sort() would be more appropriate. To order your cpm matrix by row v…

Comment: How to load fasta file with openPrimeR? by Santiago Edilberto • 0

> library(openPrimeR) There are missing/non-functioning external tools. To use the full potential of openPrimeR, please mak…

Answer: Which input file is used for DGEList in EgdeR? by Gordon Smyth 47k

I use and recommend featureCounts. Despite all that has been written on this topic, I still think that direct gene counting is faster and m…

Votes

Answer: Which input file is used for DGEList in EgdeR?

Answer: Identifying DEGs using lfcshrink()

Answer: Is this DESeq2 interactions design correct?

Comment: STRINGdb string_db$map error

Comment: How to normalize long-read RNA-seq data for comparison with short-reads

Awards • All

Scholar to James W. MacDonald 62k

Teacher to Michael Love 39k