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vanillaice
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Where is 'constructOligoSetFrom' or 'constructOligoSetListFrom' function?
crlmm
vanillaice
9.7 years ago
Shi, Tao
▴ 720
0
votes
4
replies
1.6k
views
Trouble following the first 5 lines of vanillaICE tutorial?
SNP6
crlmm
vanillaice
vanillaice crlmm
cnv
updated 9.8 years ago by
rscharpf
• 0 • written 9.8 years ago by
cafelumiere12
▴ 20
0
votes
0
replies
1.2k
views
Copy number analysis
SNP
affy
VanillaICE
SNP
affy
VanillaICE
12.9 years ago
Rob Scharpf
▴ 250
0
votes
2
replies
1.3k
views
VanillaICE
Proteomics
VanillaICE
Proteomics
VanillaICE
updated 13.3 years ago by
Valerie Obenchain
★ 6.8k • written 13.3 years ago by
Francesco Mancuso
▴ 110
0
votes
0
replies
1.2k
views
Annotation for Mouse Affy SNP arrays (MOUSEDIVm520650)?
Annotation
Cancer
VanillaICE
crlmm
Annotation
Cancer
VanillaICE
crlmm
13.4 years ago
Daniel Rico
▴ 110
0
votes
0
replies
1.5k
views
Question about using oligo and SNPchip for copy number analysis
SNP
Cancer
graph
oligo
SNPchip
oligoClasses
VanillaICE
crlmm
SNP
Cancer
graph
oligo
15.8 years ago
Min-Han Tan
▴ 40
0
votes
4
replies
1.7k
views
Creating a new instance of oligoSnpSet
Annotation
Cancer
Breast
VanillaICE
copynumber
Annotation
Cancer
Breast
VanillaICE
16.2 years ago
Steven McKinney
▴ 310
7 results • Page
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Answer: Pathview visualisation not including positive log2 fold changes
by
James W. MacDonald
68k
Without providing a self-contained example, nobody can tell you if/where you went wrong. Since you get a KEGG pathway with some of the gene…
Comment: Differential variance analysis - can i use deseq2
by
Marwan
• 0
Thanks Michael for your answer, i didnt mean to use Deseq2 directly for the variance testing, but more like asking if using the (VST) data…
Answer: Differential variance analysis - can i use deseq2
by
Michael Love
43k
We don't have a test of differential variance but other Bioconductor packages can, check similar posts (even on the right side bar) or use …
Comment: For some reason I can't update BiocManager to 3.20
by
shepherl
4.1k
It seems likely this was installed as an admin account and a user account would not be able to update. Someone with admin access should run…
Answer: UniProt.ws query for single UniRef90 ID takes several minutes
by
James W. MacDonald
68k
Any query over the internet can vary in the time to completion due to the vagaries of the connection you may have. I just tried your query …
Votes
Suggesting changing the "reply-to" field to the mailing list address.
Answer: UniProt.ws query for single UniRef90 ID takes several minutes
A: How to extract DESeq2 results for an interaction design
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
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