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Creating a new instance of oligoSnpSet
Annotation Cancer Breast VanillaICE copynumber Annotation Cancer Breast VanillaICE
14.3 years ago Steven McKinney ▴ 310
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Trouble following the first 5 lines of vanillaICE tutorial?
SNP6 crlmm vanillaice vanillaice crlmm cnv
updated 7.8 years ago by • 0 • written 7.8 years ago by ▴ 20
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Question about using oligo and SNPchip for copy number analysis
SNP Cancer graph oligo SNPchip oligoClasses VanillaICE crlmm SNP Cancer graph oligo
13.9 years ago Min-Han Tan ▴ 40
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VanillaICE
Proteomics VanillaICE Proteomics VanillaICE
updated 11.4 years ago by ★ 6.7k • written 11.4 years ago by ▴ 110
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Where is 'constructOligoSetFrom' or 'constructOligoSetListFrom' function?
crlmm vanillaice
7.8 years ago Shi, Tao ▴ 720
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Copy number analysis
SNP affy VanillaICE SNP affy VanillaICE
11.0 years ago Rob Scharpf ▴ 250
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Annotation for Mouse Affy SNP arrays (MOUSEDIVm520650)?
Annotation Cancer VanillaICE crlmm Annotation Cancer VanillaICE crlmm
11.5 years ago Daniel Rico ▴ 110
7 results • Page 1 of 1
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Answer: Correct script for featurecounts in Rsubread by Gordon Smyth 47k
See - https://bioconductor.org/packages/release/workflows/vignettes/RnaSeqGeneEdgeRQL/inst/doc/edgeRQL.html#quantifying-read-counts-for-eac…
Comment: Time-course, comparison of two groups by boczniak767 ▴ 720
Thank you very much @gordon-smyth ! I'm very happy that my test for interaction is okay. So I'll try to extend my test experiment to three …
Answer: Handling limma usage after running multiple imputation on the covariates with mi by Gordon Smyth 47k
limma is not designed to be used with multiply imputed covariates, so I can't offer a solution that uses the multiple imputes. Averaging t…
Answer: Correct script for featurecounts in Rsubread by James W. MacDonald 62k
Here's the relevant section from `?featureCounts` ``` Value: A list with the following components: counts: a data matrix c…
Comment: Can I run DESeq2 with SMART-Seq data by Assa Yeroslaviz ★ 1.5k
thanks, the filter is the other way around, true 🙈
Votes
A: gene dispersion, what does it mean?
Answer: gene dispersion, what does it mean?
Limma time series spline help
Answer: Correct script for featurecounts in Rsubread
Comment: Time-course, comparison of two groups
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