Bioconductor Variance

Showing : variance • reset

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684

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limma treatment variance

updated 3.4 years ago by Gordon Smyth 47k • written 3.4 years ago by ML18 ▴ 10

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1.2k

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pca variance deseq2 gene_id

updated 7.0 years ago by Michael Love 40k • written 7.0 years ago by NMostajo ▴ 10

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1.2k

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deseq2 variance lrt differential gene expression

updated 6.2 years ago by Ryan C. Thompson 7.8k • written 6.2 years ago by rclaire ▴ 20

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4.9k

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deseq2 counts DESeqtransform variance deviation

updated 5.6 years ago by Michael Love 40k • written 5.6 years ago by Casper Peters • 0

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630

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deseq2 variance genes

updated 5.5 years ago by Michael Love 40k • written 5.5 years ago by hs.lansdell ▴ 20

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976

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variance formula expression

updated 4.4 years ago by mikhael.manurung ▴ 270 • written 4.4 years ago by rina ▴ 20

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568

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deseq2 vst variance

updated 4.0 years ago by Michael Love 40k • written 4.0 years ago by Bitao Qiu • 0

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1.9k

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limma arrayWeights variance sampleQuality microarray

updated 7.6 years ago by Ryan C. Thompson 7.8k • written 7.7 years ago by svlachavas ▴ 810

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759

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supervised edgeR variance RNASeq heatmaps

updated 3 months ago by Gordon Smyth 47k • written 5 months ago by mohammedtoufiq91 ▴ 10

9 results • Page 1 of 1

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Answer: DESeq2 + analysis question for design with uneven time point design by Michael Love 40k

I'd recommend reaching out to a local statistician or someone familiar with linear models in R. Unfortunately, I have to reserve my time on…

Answer: Genes with highest differential expression have very low read counts for most ge by Michael Love 40k

Have you use `lfcShrink`? Or `results` with `lfcThreshold`? Either of these are recommended for prioritizing DE genes.

Comment: Adjusting for baseline when having longitudinal data, mixed model and no treat by Gordon Smyth 47k

> equivqalent in limma would be like a gene by gene specificic design matrix where no BL time point would exist but a continuous variable t…

Comment: Extract Limma Adjusted Values for Plotting by ATpoint ★ 2.9k

Yes, with normalized counts on log2 scale.

Comment: Adjusting for baseline when having longitudinal data, mixed model and no treat by Anna ▴ 20

A no I never referred to transcriptomic data when I was talking about "standard procedure" I was referring to the way we analyze longitudin…

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A: Ranges from a fasta file

Answer: NA transcript values in my Txdb

Comment: Interpret plot from DiffBind

Answer: Use with_go along with other filters in getBM function

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Scholar to Mike Smith ★ 6.0k