Bioconductor VariancePartition

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variancePartition

7 days ago • updated 6 days ago Le • 0

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variancePartition BiocParallel

4 months ago hayleyw • 0

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variancePartition RNASeqData limma BulkRNAseq RNASeq

updated 4 months ago by Gordon Smyth 50k • written 6 months ago by Gimena • 0

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variancePartition mixedmodel dream

8 months ago hayleyw • 0

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DESeq2 variancePartition

13 months ago • updated 12 months ago Weiqian ▴ 10

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673

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RNAseq variancePartition edgeR dream

13 months ago DH • 0

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variancePa variancePartition limma-voom dream

updated 13 months ago by Gordon Smyth 50k • written 14 months ago by Le • 0

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expression variancePartition edgeR

20 months ago Jonathan • 0

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edgeR limma variancePartition

updated 2.8 years ago by Gordon Smyth 50k • written 2.8 years ago by jackgisby • 0

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limma variancePartition

updated 2.8 years ago by Gordon Smyth 50k • written 2.8 years ago by jarod ▴ 30

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variancePartition limma

3.0 years ago Junghoon ▴ 10

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BiocParallel limma variancePartition

3.0 years ago • updated 2.8 years ago Junghoon ▴ 10

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variancePartition limma BiocParallel

3.0 years ago Junghoon ▴ 10

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dream variancePartition limma differential expression repeated measures

updated 4.5 years ago by Gordon Smyth 50k • written 4.6 years ago by hermidalc ▴ 20

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variancepartition lme4 mixedmodel

updated 4.6 years ago by gabriel.hoffman ▴ 110 • written 4.7 years ago by c.taylor • 0

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limma voom variancePartition dream

updated 4.6 years ago by gabriel.hoffman ▴ 110 • written 4.8 years ago by Ben ▴ 50

16 results • Page 1 of 1

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Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k

Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…

Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k

IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…

Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0

I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…

Votes

C: null model and DEXSeqDataSet object in DEXSEQ

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

A: How to explain how DESeq2 works to someone with zero bioinformatics background?

Answer: Interpret plot from DiffBind

Answer: How to retrieve gene ontology GO class from gene list?

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Supporter to JKim • 0