Bioconductor Variantannotation

Showing : variantannotation • reset

votes

replies

135

views

VariantAnnotation docker trio

updated 25 days ago by ATpoint ★ 2.9k • written 25 days ago by sethberke • 0

votes

replies

474

views

MetID TxDB.Hsapiens.UCSC.hg38.knownGene locateVariants GenomicFeatures VariantAnnotation

11 weeks ago davidhillis • 0

votes

replies

189

views

vcf AS_SB_TABLE readVcf Mutect2 VariantAnnotation

3 months ago therealgenna • 0

votes

replies

363

views

VariantAnnotation

4 months ago Stephanie M. Gogarten ▴ 840

votes

609

views

RNAseq123 VariantFiltering Alignment VariantAnnotation

updated 7 months ago by James W. MacDonald 63k • written 7 months ago by Mohamed ▴ 10

votes

replies

445

views

R VariantAnnotation

8 months ago rwan.work • 0

votes

replies

288

views

R VariantAnnotation

8 months ago rwan.work • 0

votes

replies

2.1k

views

VariantAnnotation VariantAnnotation VariantAnnotation VariantAnnotation

written 10.4 years ago by Stephanie M. Gogarten ▴ 840

votes

replies

3.5k

views

VariantAnnotation VariantAnnotation VariantAnnotation VariantAnnotation

written 9.3 years ago by Fong Chun Chan ▴ 320

vote

replies

5.1k

views

VariantAnnotation VariantAnnotation VariantAnnotation VariantAnnotation

written 10.3 years ago by Valerie Obenchain ★ 6.8k

10 results • Page 1 of 1

Recent ...

Replies

Comment: Handling NA's in Deseq2 by Asger Mølgaard • 0

Dear ATpoint Thank you for your response - it works like a charm! You just saved a PhD-study! Thank you :)

Comment: Ensembl plants at annotationHub? by Bruno • 0

Hi Guido, Thanks for your fast reply the error was as said in my question "Annotation must be a GRanges object", when I tried to use the a…

Comment: Ensembl plants at annotationHub? by Guido Hooiveld ★ 3.6k

You did not show the code that resulted in that error, so we have to guess what you did. Yet, the [R package][1] `Signac` contains the func…

Comment: Query regarding phyloseq object construct with QIIME output by betterwound • 0

Thanks for sharing the code [geometry dash](https://geometrydash.io/)

Answer: Ensembl plants at annotationHub? by Bruno • 0

Hi Johannes, First, thank you so much for providing these annotations for the community. We feel often a bit left off in the plant commu…

Votes

C: Minimum number of samples per treatment/group for WGCNA analysis

A: Minimum number of samples per treatment/group for WGCNA analysis

Minimum number of samples per treatment/group for WGCNA analysis

Comment: DESeq2 on multilevel design variable

Comment: Ensembl plants at annotationHub?

Awards • All