Bioconductor Variantannotation

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135

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VariantAnnotation docker trio

updated 25 days ago by ATpoint ★ 2.9k • written 25 days ago by sethberke • 0

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476

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MetID TxDB.Hsapiens.UCSC.hg38.knownGene locateVariants GenomicFeatures VariantAnnotation

11 weeks ago davidhillis • 0

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189

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vcf AS_SB_TABLE readVcf Mutect2 VariantAnnotation

3 months ago therealgenna • 0

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364

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VariantAnnotation

5 months ago • updated 4 months ago Stephanie M. Gogarten ▴ 840

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609

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RNAseq123 VariantFiltering Alignment VariantAnnotation

updated 7 months ago by James W. MacDonald 63k • written 7 months ago by Mohamed ▴ 10

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445

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R VariantAnnotation

8 months ago rwan.work • 0

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289

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R VariantAnnotation

8 months ago rwan.work • 0

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3.5k

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VariantAnnotation VariantAnnotation VariantAnnotation VariantAnnotation

written 9.3 years ago by Fong Chun Chan ▴ 320

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5.1k

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VariantAnnotation VariantAnnotation VariantAnnotation VariantAnnotation

written 10.3 years ago by Valerie Obenchain ★ 6.8k

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2.1k

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VariantAnnotation VariantAnnotation VariantAnnotation VariantAnnotation

written 10.4 years ago by Stephanie M. Gogarten ▴ 840

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Comment: How to use txtimport and do differential expression by ATpoint ★ 2.9k

Hello, a few things on general forum etiquette: - english please - limit code to the necessary parts, removing all paths, headers and stuf…

Comment: How to load fasta file with openPrimeR? by betterwound • 0

thanks for sharing the information [https://support.bioconductor.org/p/9134858/#9149314][1] [doodle jump][2] [1]: https://support.bioc…

Comment: BioC2023 abstract submission is now open! by betterwound • 0

I will submit in here [https://openreview.net/group?id=bioconductor.org/BioC/2023/Conference][1] [idle breakout][2] [1]: https://suppor…

Comment: Handling NA's in Deseq2 by Asger Mølgaard • 0

Dear ATpoint Thank you for your response - it works like a charm! You just saved a PhD-study! Thank you :)

Comment: Ensembl plants at annotationHub? by Bruno • 0

Hi Guido, Thanks for your fast reply the error was as said in my question "Annotation must be a GRanges object", when I tried to use the a…

Votes

C: Minimum number of samples per treatment/group for WGCNA analysis

A: Minimum number of samples per treatment/group for WGCNA analysis

Minimum number of samples per treatment/group for WGCNA analysis

Comment: DESeq2 on multilevel design variable

Comment: Ensembl plants at annotationHub?

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