Biostar Variantannotation

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162

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VariantAnnotation

4 weeks ago • updated 25 days ago Stephanie M. Gogarten ▴ 840

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302

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RNAseq123 VariantFiltering Alignment VariantAnnotation

updated 3 months ago by James W. MacDonald 62k • written 3 months ago by Mohamed • 0

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323

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R VariantAnnotation

4 months ago rwan.work • 0

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183

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R VariantAnnotation

4 months ago rwan.work • 0

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1.9k

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VariantAnnotation VariantAnnotation VariantAnnotation VariantAnnotation

written 10.1 years ago by Stephanie M. Gogarten ▴ 840

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537

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VariantAnnotation

updated 11 months ago by Raül • 0 • written 13 months ago by paolo.provero • 0

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3.3k

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VariantAnnotation VariantAnnotation VariantAnnotation VariantAnnotation

written 9.0 years ago by Fong Chun Chan ▴ 320

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5.0k

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VariantAnnotation VariantAnnotation VariantAnnotation VariantAnnotation

written 10.0 years ago by Valerie Obenchain ★ 6.7k

8 results • Page 1 of 1

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Comment: Strand information in a GAlignmentsList object derived from strand-specific pair by James W. MacDonald 62k

One reason to use a GAlignmentsList object is if you have 'too many' unpaired reads for some reason and you want to recover them. And it's …

Comment: Strand information in a GAlignmentsList object derived from strand-specific pair by Hervé Pagès 16k

Hi Robert, Just to clarify, a GAlignmentsList object represents a list of GAlignments objects, in the same way that a GRangesList object r…

Comment: AnnotationForge::makeOrgPackageFromNCBI - ERROR to access url (NCBI FTP site) by James W. MacDonald 62k

Does this work? ``` > tmp <- tempfile("whatevs") > download.file("ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2pubmed.gz", tmp, mode = "wb") …

Comment: Not able to download recount3 data by Niveditha ▴ 10

Thank you so much, Leo. This works.

Comment: STRINGdb string_db$map error by Rodrigo ▴ 10

Hi Damian, Thanks a lot. As it happens, I'm stupid and used an unexistent name column :) I got a bit misled because of the warning message.

Votes

Comment: STRINGdb string_db$map error

Comment: How to normalize long-read RNA-seq data for comparison with short-reads

Answer: Library sizes of miRNA sequencing data and TMM normalization with Edge-R

C: Can't install TopmedPipeline Package

Comment: Question about GWASTools gdsSubset

Awards • All

Scholar to James W. MacDonald 62k

Teacher to Michael Love 39k