Showing : variantannotation • reset
4
votes
9
replies
3.5k
views
Create protein sequences including variants from a VCF file
VariantAnnotation customProDB
updated 3 months ago by • 0 • written 5.5 years ago by ▴ 50
2
votes
2
replies
1.7k
views
Matching Variants Between Two VCF Objects
VariantAnnotation
written 3.8 years ago by ★ 1.5k
2
votes
4
replies
1.5k
views
Obtaining Comments From VCF Header
VariantAnnotation VCFHeader
written 4.2 years ago by ★ 1.5k
2
votes
3
replies
1.2k
views
readVcf(remoteFile, "hg19", "region") works on macos, fails on linux and in docker
open.BcfFile VariantAnnotation
updated 7 months ago by • 0 • written 3.2 years ago by ▴ 470
0
votes
5
replies
728
views
locateVariant from VariantAnnotation returns wrong results
VariantAnnotation locateVariant
updated 9 months ago by 67k • written 9 months ago by ▴ 70
0
votes
0
replies
680
views
Variant Filtering on very large VCF files
VariantAnnotation VariantFiltering
11 months ago Bogdan ▴ 670
1
vote
2
replies
655
views
How to compare subset of samples from VCF files
VCF VariantAnnotation
updated 3 months ago by 51k • written 3 months ago by • 0
0
votes
1
reply
322
views
Is random access by row index possible for an indexed VCF file?
Rsamtools VariantAnnotation
updated 6 months ago by 67k • written 6 months ago by ▴ 180
0
votes
0
replies
299
views
RFC: significant changes to ensemblVEP package
VariantAnnotation ensemblVEP
7 months ago Vincent J. Carey, Jr. 6.7k
0
votes
0
replies
245
views
Using variantAnnotation to put together genotype and consequence information
variantAnn VariantAnnotation
6 weeks ago ramiro.barrantes ▴ 10
0
votes
0
replies
228
views
Cannot use `readVcf()` on a file created with `writeVcf()`
VariantAnnotation
4 months ago Stevie Pederson • 0
0
votes
1
reply
55
views
ensemblVEP deprecation and how to reproduce
VariantAnnotation
updated 1 day ago by 6.7k • written 1 day ago by • 0
12 results • Page 1 of 1
Recent ...
Replies
Comment: SingleR Label.Ont by Stepah • 0
[Aussie Play][1] cares about its Australian players by offering a safe and secure gaming experience where there is never a dull moment. The…
Comment: ensemblVEP deprecation and how to reproduce by Vincent J. Carey, Jr. 6.7k
What aspect of ensemblVEP are you looking for? The vignette https://bioconductor.org/packages/release/bioc/vignettes/VariantAnnotation/in…
Answer: Help with design matrix for RNA-seq data using edgeR by Gordon Smyth 51k
This forum is intended to help with software usage and syntax rather than to answer research questions, and your question is a definitely a…
Answer: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic by Michael Love 42k
DESeq2 has a way of fixing the reference pseudo-sample used for normalization. In estimateSizeFactors man page, you will see an argument g…
Comment: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic by Michael Love 42k
Sorry - I requested this to be posted here, I will answer.
Votes
Answer: Help with design matrix for RNA-seq data using edgeR
Answer: Should tSNE from biol. replicates look alike?
Answer: Should tSNE from biol. replicates look alike?
Comment: fgsea stuck in an infinite loop in the middle of the run
Answer: Empty Results from champ.DMP Despite Expected Output
Awards • All
Scholar to James W. MacDonald 67k
Popular Question to Matthew Thornton ▴ 380
Popular Question to ZheFrench ▴ 60
Popular Question to Gordon Smyth 51k
Popular Question to erik.burchard • 0
Locations • All
The city by the bay, 1 minute ago
Sweden, 8 minutes ago
France, 22 minutes ago
UPF, Barcelona, Spain, 58 minutes ago
WEHI, Melbourne, Australia, 2 hours ago
Traffic: 841 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6