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variantannotation
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TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from various chromosome being part of the same gene
MetID
TxDB.Hsapiens.UCSC.hg38.knownGene
locateVariants
GenomicFeatures
VariantAnnotation
6 days ago • updated 2 days ago
davidhillis
• 0
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Comment: KEGG enrichment in R and gene IDs
by
Laia
▴ 10
symbol_genes[1:10] "TREML3P" "IL13RA2" "MMP10" "LOC124907722" "AKR1C7P" "LOC124903970" "IL11" …
Answer: KEGG enrichment in R and gene IDs
by
James W. MacDonald
62k
ncbi-geneID and ENTREZID are the same thing.
Comment: KEGG enrichment in R and gene IDs
by
Guido Hooiveld
★ 3.6k
Please show the output from `symbol_genes[1:10]` and `entrez_genes[1:10]`; thus (for example) the first 10 symbols resp. entrezids.
Comment: Sudden error with KEGG analysis using gometh
by
pedro-marra
▴ 10
Thank you very much! Now it is working!
Comment: KEGG enrichment in R and gene IDs
by
Laia
▴ 10
Hi Guido, Thank you for your quick reply. Then if they match, I don't get any mapping. This is my code: symbol_genes <- names(deLogFC…
Votes
Comment: RUVr batch correction doubling number of DEGs
Comment: RUVr batch correction doubling number of DEGs
Answer: RUVr batch correction doubling number of DEGs
A: LogFC: how do you determine the cutoff for differentially expressed genes?
Confused about design for RNA seq experiment
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