Bioconductor Variantfiltering

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VariantAnnotation VariantFiltering

3 days ago Bogdan ▴ 660

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155

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VariantFiltering

updated 3 months ago by Robert Castelo ★ 3.0k • written 3 months ago by Andrew Beggs ▴ 90

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916

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RNAseq123 VariantFiltering Alignment VariantAnnotation

updated 10 months ago by James W. MacDonald 63k • written 10 months ago by Mohamed ▴ 20

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1.2k

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bioconductor variantfiltering

6.1 years ago Claus.Hultschig • 0

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1.2k

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variantannotation variantfiltering

updated 6.5 years ago by Michael Lawrence 11k • written 6.5 years ago by Bogdan ▴ 660

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997

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VariantFiltering

8.2 years ago claire.simpson • 0

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1.3k

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sequencing transcription variantfiltering annotation News

8.3 years ago Matthew Ritchie ▴ 1000

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1.2k

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variantfiltering phastcons

updated 8.4 years ago by Robert Castelo ★ 3.0k • written 8.4 years ago by Stefanie Tauber ▴ 40

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1.6k

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VariantFiltering VariantFiltering

9.4 years ago Robert Castelo ★ 3.0k

9 results • Page 1 of 1

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Comment: Deseq2 calculated log2foldchange not consistent with RPM in IP-small RNA-seq by Shihui • 0

Hi Michael, Yes I manually calculated the RPMs by dividing each genes RPM to the library read depth. I didn't do any other normalization …

Comment: shinyMethyl - saving the file by dorota.komar • 0

I tried printing the page as pdf, unfortunately I get the same problem. I guess for now, I will need to save the graphs separately :) Than…

Answer: biomaRt code/getBM function no longer importing 'coding' sequence via seqType ar by Mike Smith ★ 6.1k

I'll echo James' suggestion to use the GRCh37 mirror. Most mirrors only have a guaranteed lifetime of 5 years from Ensembl, although it se…

Comment: biomaRt code/getBM function no longer importing 'coding' sequence via seqType ar by James W. MacDonald 63k

I should also point out that you can find this out by yourself by going to [ensembl][1], clicking on the Biomart link, and then scrolling t…

Answer: biomaRt code/getBM function no longer importing 'coding' sequence via seqType ar by James W. MacDonald 63k

It's my understanding that the archived Biomart data are not complete, which is likely why you cannot get sequences. But you apparently jus…

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ComBat_seq function in sva package does not return a matrix

Answer: ComBat_seq function in sva package does not return a matrix

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