Bioconductor Variantfiltering

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VariantAnnotation VariantFiltering

6 months ago Bogdan ▴ 670

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338

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VariantFiltering

updated 9 months ago by Robert Castelo ★ 3.2k • written 9 months ago by Andrew Beggs ▴ 90

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RNAseq123 VariantFiltering Alignment VariantAnnotation

updated 17 months ago by James W. MacDonald 65k • written 17 months ago by Mohamed ▴ 30

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bioconductor variantfiltering

6.7 years ago Claus.Hultschig • 0

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variantannotation variantfiltering

updated 7.1 years ago by Michael Lawrence ★ 11k • written 7.1 years ago by Bogdan ▴ 670

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VariantFiltering

8.7 years ago claire.simpson • 0

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sequencing transcription variantfiltering annotation News

8.8 years ago Matthew Ritchie ▴ 1000

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variantfiltering phastcons

updated 9.0 years ago by Robert Castelo ★ 3.2k • written 9.0 years ago by Stefanie Tauber ▴ 40

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1.7k

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VariantFiltering VariantFiltering

9.9 years ago Robert Castelo ★ 3.2k

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Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by russ.bainer ▴ 10

Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…

Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Chris • 0

Hi Robert, If I don't want to use all pathway in c2 gene set but only a few pathways of interested, how can I do that? So we try to get a …

Comment: How to retrieve detailed regression results from deseq2 by Weiqian ▴ 10

Hi Michael, thanks for the answer! I'll have a look : )

Comment: DESeq filtering specific to contrasts by Michael Love 41k

It will likely not filter it out, but really the per-dataset details would affect the results.

Comment: DESeq filtering specific to contrasts by Carlin95 • 0

Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…

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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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