Bioconductor Variants

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mutect2 variants pon

written 7 months ago by ramiro.barrantes ▴ 10

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1.9k

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variants waterfall GenVisR

updated 5.3 years ago by zlskidmore ▴ 30 • written 5.3 years ago by Jeni ▴ 10

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1.5k

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whole genome sequencing variants vcf WGS

7.1 years ago Vincent J. Carey, Jr. 6.7k

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1.7k

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variants variantannotation SNPlocs.Hsapiens.dbSNP150.GRCh38 biomaRt

8.0 years ago sandmann.t ▴ 70

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1.7k

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GoogleGenomics genetics variants

9.1 years ago Vincent J. Carey, Jr. 6.7k

5 results • Page 1 of 1

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Comment: tximeta cannot open annotation gtf? by Michael Love 43k

Yes, so this is the same type of error you would get if you tried to assemble a *SummarizedExperiment* manually with tximport + GTF process…

Answer: tximeta cannot open annotation gtf? by ATpoint ★ 5.0k

> Timeout of 60 seconds was reached You have to increase the default timeout limits for downloads, `options(timeout=3600)`. GENCODE serve…

Answer: GSEA error by James W. MacDonald 68k

At a very high level, the way non-model organisms are annotated is by using blast to find orthologs in other species that are well annotate…

Comment: Unable to find ENTREZ IDs by Adithi • 0

Hi James, Thank you so much for your reply. My main goal is to find ortholog genes from chinese hamster gene symbols to mouse gene symbols…

Comment: Unable to find ENTREZ IDs by Adithi • 0

Hi James, Thank you so much for your reply. My main goal is to find ortholog genes from chinese hamster gene symbols to mouse gene symbols…

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Answer: GSEA error

Answer: OrgDb for maize

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