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Excluding samples as referenced in SummarizedExperiment vignette
SummarizedExperiment
vignette
2.6 years ago
BioInfoBeginnerrr
• 0
4
votes
5
replies
2.7k
views
Error in the vignette for biomaRt (when accessing an ensembl archive)
biomaRt
vignette
updated 3.5 years ago by
ashleymaeconard
▴ 10 • written 4.9 years ago by
Russ Hyde
▴ 10
2
votes
2
replies
1.1k
views
How to write the installation section in the vignette of a package that has not been sent into Bioconductor yet
newpackage
vignette
installation
updated 5.0 years ago by
shepherl
4.0k • written 5.0 years ago by
Krutik Patel
▴ 10
0
votes
1
reply
1.0k
views
Error executing flowcore vignette
flowcore
vignette
software error
updated 7.0 years ago by
Jiang, Mike
★ 1.3k • written 7.0 years ago by
Robert Baer
▴ 70
7
votes
2
replies
1.5k
views
Duplicated author affiliations in BiocStyle-based HTML document
biocstyle
vignette
updated 7.2 years ago by
Andrzej Oleś
▴ 750 • written 7.2 years ago by
Aaron Lun
★ 28k
0
votes
3
replies
2.7k
views
unable to connect to 'string.uzh.ch' on port 80
STRINGdb
vignette
updated 7.4 years ago by
Gregor Rot
▴ 10 • written 7.4 years ago by
mwinerip
• 0
3
votes
3
replies
2.0k
views
Error running CellMix SampleAnalysis vignette
software error
cellmix
vignette
expressionset
7.7 years ago
gabor.halasz
• 0
2
votes
3
replies
2.4k
views
No color support in ggbio for autoplot
ggbio
autoplot
color
vignette
updated 8.7 years ago by
aaron
▴ 10 • written 8.7 years ago by
timothypyork
• 0
1
vote
2
replies
1.8k
views
GitHub Continuous Integration, unit-tests, vignettes: R Packaging
github
vignette
test
developers
updated 8.8 years ago by
Dan Tenenbaum
★ 8.2k • written 8.8 years ago by
anthonycolombo60
• 0
3
votes
2
replies
1.5k
views
question regarding embedding images in vignette when creating bioconductor package
vignette
updated 9.2 years ago by
Dan Tenenbaum
★ 8.2k • written 9.2 years ago by
KB
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Comment: dmpFinder for other objects
by
neyousha
• 0
Hi James, Thank you a lot for responding. Hmm... so do you think if have matrix average_beta below: ![average_beta_matrix][1] [1]:…
Comment: DEseq2 time-series design
by
Michael Love
42k
Would you mind making a new post -- it's just easier for threaded content. And feel free to post any particular code or images you need.
Comment: Rsubread alignment crashes at 35%, valgrind indicates invalid writes
by
Yang Liao
▴ 440
Thanks for taking the time to report the bug! The provided `Valgrind` report is very helpful and suggests the issue lies within the banded …
Comment: Rsubread - Error on buildindex - big ref sequence
by
mdejesus
• 0
Hi just checking if this limit still exists, and/or if there are plans to lift it? subread is our preferred tool kit, but we have some CRIS…
Answer: dmpFinder for other objects
by
James W. MacDonald
67k
The help page is helpful for answering your question: ``` Usage: dmpFinder(dat, pheno, type = c("categorical", "continuous"), …
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Answer: dmpFinder for other objects
GSVA ssGSEA vs. Broad implementation of ssGSEA
Answer: How to control batch effect if Group and batch are same?
Answer: How to control batch effect if Group and batch are same?
Answer: How to control batch effect if Group and batch are same?
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