Biostar Vignette

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biomaRt vignette

updated 14 months ago by ashleymaeconard ▴ 10 • written 2.6 years ago by Russ Hyde ▴ 10

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STRINGdb vignette

updated 5.2 years ago by Gregor Rot ▴ 10 • written 5.2 years ago by mwinerip • 0

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ggbio autoplot color vignette

updated 6.4 years ago by aaron ▴ 10 • written 6.4 years ago by timothypyork • 0

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software error cellmix vignette expressionset

5.5 years ago gabor.halasz • 0

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SummarizedExperiment vignette

3 months ago BioInfoBeginnerrr • 0

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github vignette test developers

updated 6.5 years ago by Dan Tenenbaum ★ 8.2k • written 6.5 years ago by anthonycolombo60 • 0

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biocstyle vignette

updated 4.9 years ago by Andrzej Oleś ▴ 750 • written 5.0 years ago by Aaron Lun ★ 27k

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464

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newpackage vignette installation

updated 2.7 years ago by shepherl 3.1k • written 2.7 years ago by Krutik Patel ▴ 10

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vignette

updated 6.9 years ago by Dan Tenenbaum ★ 8.2k • written 6.9 years ago by K ▴ 50

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607

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flowcore vignette software error

updated 4.8 years ago by Jiang, Mike ★ 1.3k • written 4.8 years ago by Robert Baer ▴ 70

10 results • Page 1 of 1

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Comment: Error "DESeqDataSetFromMatrix" function not found by Basti ▴ 330

Do you have any error when you run `library(DESeq2)` or `BiocManager::install("DESeq2")` ?

Answer: Compare different cell lines with tissues using limma by Gordon Smyth 45k

You just need to define contrasts corresponding to the comparisons you want to make. Just define ``` design <- model.matrix(~0+cellType) c…

Comment: What is the significance of "Zero Cross" in Ranked List Metric in Gene Set Enric by Bhavana • 0

Thank you so much for your response, I will keep in mind regarding making posts about Bioconductor packages! :)

Comment: Function simplify fails when argument ont is set to "ALL" in enrichGO function i by pengmin.wang.1 • 0

sorry, I post my question here, maybe not related to the topic. Now I'm doing enrichment using clusterprofiler and WebGestalR. Here, x <- u…

Answer: Can´t install GenomicRanges and rtracklayer by James W. MacDonald 60k

You can't just call `BiocManager::install()` and expect it to know what you want to install! You need to specify the packages you want as a…

Votes

A: Samples without pair in paired design experiment

A: weird model design for DE analysis

weird model design for DE analysis

block design to test two factors with limma

using duplicateCorrelation with limma+voom for RNA-seq data

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