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vignette
•
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0
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Excluding samples as referenced in SummarizedExperiment vignette
SummarizedExperiment
vignette
2.1 years ago
BioInfoBeginnerrr
• 0
4
votes
5
replies
2.5k
views
Error in the vignette for biomaRt (when accessing an ensembl archive)
biomaRt
vignette
updated 3.1 years ago by
ashleymaeconard
▴ 10 • written 4.5 years ago by
Russ Hyde
▴ 10
2
votes
2
replies
944
views
How to write the installation section in the vignette of a package that has not been sent into Bioconductor yet
newpackage
vignette
installation
updated 4.5 years ago by
shepherl
3.8k • written 4.5 years ago by
Krutik Patel
▴ 10
0
votes
1
reply
913
views
Error executing flowcore vignette
flowcore
vignette
software error
updated 6.6 years ago by
Jiang, Mike
★ 1.3k • written 6.6 years ago by
Robert Baer
▴ 70
7
votes
2
replies
1.3k
views
Duplicated author affiliations in BiocStyle-based HTML document
biocstyle
vignette
updated 6.8 years ago by
Andrzej Oleś
▴ 750 • written 6.8 years ago by
Aaron Lun
★ 28k
0
votes
3
replies
2.4k
views
unable to connect to 'string.uzh.ch' on port 80
STRINGdb
vignette
updated 7.0 years ago by
Gregor Rot
▴ 10 • written 7.0 years ago by
mwinerip
• 0
3
votes
3
replies
1.8k
views
Error running CellMix SampleAnalysis vignette
software error
cellmix
vignette
expressionset
7.3 years ago
gabor.halasz
• 0
2
votes
3
replies
2.2k
views
No color support in ggbio for autoplot
ggbio
autoplot
color
vignette
updated 8.2 years ago by
aaron
▴ 10 • written 8.2 years ago by
timothypyork
• 0
1
vote
2
replies
1.6k
views
GitHub Continuous Integration, unit-tests, vignettes: R Packaging
github
vignette
test
developers
updated 8.3 years ago by
Dan Tenenbaum
★ 8.2k • written 8.3 years ago by
anthonycolombo60
• 0
3
votes
2
replies
1.3k
views
question regarding embedding images in vignette when creating bioconductor package
vignette
updated 8.7 years ago by
Dan Tenenbaum
★ 8.2k • written 8.7 years ago by
KB
▴ 50
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Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR)
by
Michael Love
41k
> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
With all my love, thank you Guido, GOxploreR beeing a big ally for me. I don't know how to be grateful right now.
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Answer: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
swbarnes2
★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error
by
James W. MacDonald
65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Votes
C: when to apply quantile normalization with voom in limma/voom framework with RNA-
A: How to know if I should use voomWithQualityWeights() or not?
A: Weird results (ribosomal proteins / Y-linked genes) in limma/voom
Answer: Log-cpm values from limma
Answer: Log-cpm values from limma
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