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vignette
•
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0
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2
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515
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Excluding samples as referenced in SummarizedExperiment vignette
SummarizedExperiment
vignette
19 months ago
BioInfoBeginnerrr
• 0
4
votes
5
replies
2.3k
views
Error in the vignette for biomaRt (when accessing an ensembl archive)
biomaRt
vignette
updated 2.5 years ago by
ashleymaeconard
▴ 10 • written 3.9 years ago by
Russ Hyde
▴ 10
2
votes
2
replies
773
views
How to write the installation section in the vignette of a package that has not been sent into Bioconductor yet
newpackage
vignette
installation
updated 4.0 years ago by
shepherl
3.5k • written 4.0 years ago by
Krutik Patel
▴ 10
0
votes
1
reply
821
views
Error executing flowcore vignette
flowcore
vignette
software error
updated 6.0 years ago by
Jiang, Mike
★ 1.3k • written 6.0 years ago by
Robert Baer
▴ 70
7
votes
2
replies
1.1k
views
Duplicated author affiliations in BiocStyle-based HTML document
biocstyle
vignette
updated 6.2 years ago by
Andrzej Oleś
▴ 750 • written 6.2 years ago by
Aaron Lun
★ 28k
0
votes
3
replies
2.2k
views
unable to connect to 'string.uzh.ch' on port 80
STRINGdb
vignette
updated 6.4 years ago by
Gregor Rot
▴ 10 • written 6.4 years ago by
mwinerip
• 0
3
votes
3
replies
1.7k
views
Error running CellMix SampleAnalysis vignette
software error
cellmix
vignette
expressionset
6.7 years ago
gabor.halasz
• 0
2
votes
3
replies
2.0k
views
No color support in ggbio for autoplot
ggbio
autoplot
color
vignette
updated 7.7 years ago by
aaron
▴ 10 • written 7.7 years ago by
timothypyork
• 0
1
vote
2
replies
1.5k
views
GitHub Continuous Integration, unit-tests, vignettes: R Packaging
github
vignette
test
developers
updated 7.8 years ago by
Dan Tenenbaum
★ 8.2k • written 7.8 years ago by
anthonycolombo60
• 0
3
votes
2
replies
1.2k
views
question regarding embedding images in vignette when creating bioconductor package
vignette
updated 8.2 years ago by
Dan Tenenbaum
★ 8.2k • written 8.2 years ago by
KB
▴ 50
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Comment: DiffBind handling of replicates and consensus
by
Rory Stark
★ 5.0k
You may want to try different values for the `normalize` parameter: dbObj <- dba.normalize(DBA = dbObj, library = "RiP", normalize=DBA…
Comment: DiffBind: dba.plotProfile(profiles)
by
Rory Stark
★ 5.0k
Yes, setting `raster_quality` down is a good way to address this issue. I've taken to using `raster_quality=1` in general as I think the pl…
Comment: DiffBind: dba.plotProfile(profiles)
by
Dorien
▴ 10
Not really an answer as I don't know really know why , but I also had the same issue and may have found a workaround ! If I set maxSites > …
Comment: Suggested package missing from Development version of Bioconductor
by
shepherl
3.5k
Is your package in review or already in Bioconductor? Its harder if it is in review because we can't tell that the package has or can build…
Comment: biomaRt code/getBM function no longer importing 'coding' sequence via seqType ar
by
andrew.b.kleist
• 0
This worked perfectly! I was able to retrieve the sequences of interest using ```host="https://grch37.ensembl.org"``` within the useEnsembl…
Votes
Answer: DiffBind - how to prep the sample matrix when multiple bam files are used by MAC
Comment: DiffBind: dba.plotProfile(profiles)
Normalisation of data using DESeq2 with multi-groups
Answer: Normalisation of data using DESeq2 with multi-groups
Answer: Deseq2 calculated log2foldchange not consistent with RPM in IP-small RNA-seq
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