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Excluding samples as referenced in SummarizedExperiment vignette
SummarizedExperiment
vignette
2.1 years ago
BioInfoBeginnerrr
• 0
4
votes
5
replies
2.5k
views
Error in the vignette for biomaRt (when accessing an ensembl archive)
biomaRt
vignette
updated 3.0 years ago by
ashleymaeconard
▴ 10 • written 4.4 years ago by
Russ Hyde
▴ 10
2
votes
2
replies
917
views
How to write the installation section in the vignette of a package that has not been sent into Bioconductor yet
newpackage
vignette
installation
updated 4.5 years ago by
shepherl
3.8k • written 4.5 years ago by
Krutik Patel
▴ 10
0
votes
1
reply
908
views
Error executing flowcore vignette
flowcore
vignette
software error
updated 6.5 years ago by
Jiang, Mike
★ 1.3k • written 6.5 years ago by
Robert Baer
▴ 70
7
votes
2
replies
1.3k
views
Duplicated author affiliations in BiocStyle-based HTML document
biocstyle
vignette
updated 6.7 years ago by
Andrzej Oleś
▴ 750 • written 6.7 years ago by
Aaron Lun
★ 28k
0
votes
3
replies
2.4k
views
unable to connect to 'string.uzh.ch' on port 80
STRINGdb
vignette
updated 6.9 years ago by
Gregor Rot
▴ 10 • written 6.9 years ago by
mwinerip
• 0
3
votes
3
replies
1.8k
views
Error running CellMix SampleAnalysis vignette
software error
cellmix
vignette
expressionset
7.2 years ago
gabor.halasz
• 0
2
votes
3
replies
2.2k
views
No color support in ggbio for autoplot
ggbio
autoplot
color
vignette
updated 8.2 years ago by
aaron
▴ 10 • written 8.2 years ago by
timothypyork
• 0
1
vote
2
replies
1.6k
views
GitHub Continuous Integration, unit-tests, vignettes: R Packaging
github
vignette
test
developers
updated 8.3 years ago by
Dan Tenenbaum
★ 8.2k • written 8.3 years ago by
anthonycolombo60
• 0
3
votes
2
replies
1.3k
views
question regarding embedding images in vignette when creating bioconductor package
vignette
updated 8.7 years ago by
Dan Tenenbaum
★ 8.2k • written 8.7 years ago by
KB
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
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This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
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transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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