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vignette
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Excluding samples as referenced in SummarizedExperiment vignette
SummarizedExperiment
vignette
12 weeks ago • updated 11 weeks ago
BioInfoBeginnerrr
• 0
4
votes
5
replies
1.8k
views
Error in the vignette for biomaRt (when accessing an ensembl archive)
biomaRt
vignette
updated 13 months ago by
ashleymaeconard
▴ 10 • written 2.6 years ago by
Russ Hyde
▴ 10
2
votes
2
replies
449
views
How to write the installation section in the vignette of a package that has not been sent into Bioconductor yet
newpackage
vignette
installation
updated 2.6 years ago by
shepherl
3.1k • written 2.6 years ago by
Krutik Patel
▴ 10
0
votes
1
reply
588
views
Error executing flowcore vignette
flowcore
vignette
software error
updated 4.7 years ago by
Jiang, Mike
★ 1.3k • written 4.7 years ago by
Robert Baer
▴ 70
7
votes
2
replies
775
views
Duplicated author affiliations in BiocStyle-based HTML document
biocstyle
vignette
updated 4.9 years ago by
Andrzej Oleś
▴ 750 • written 4.9 years ago by
Aaron Lun
★ 27k
0
votes
3
replies
1.7k
views
unable to connect to 'string.uzh.ch' on port 80
STRINGdb
vignette
updated 5.1 years ago by
Gregor Rot
▴ 10 • written 5.1 years ago by
mwinerip
• 0
3
votes
3
replies
1.4k
views
Error running CellMix SampleAnalysis vignette
software error
cellmix
vignette
expressionset
5.4 years ago
gabor.halasz
• 0
2
votes
3
replies
1.6k
views
No color support in ggbio for autoplot
ggbio
autoplot
color
vignette
updated 6.3 years ago by
aaron
▴ 10 • written 6.3 years ago by
timothypyork
• 0
1
vote
2
replies
1.1k
views
GitHub Continuous Integration, unit-tests, vignettes: R Packaging
github
vignette
test
developers
updated 6.4 years ago by
Dan Tenenbaum
★ 8.2k • written 6.4 years ago by
anthonycolombo60
• 0
3
votes
2
replies
870
views
question regarding embedding images in vignette when creating bioconductor package
vignette
updated 6.8 years ago by
Dan Tenenbaum
★ 8.2k • written 6.8 years ago by
K
▴ 50
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Comment: Italicise
by
Pau
• 0
They're the same: example of the vignette: "italic('VCAM1')" and result from my data: "italic('CARS1')" As I am running against time be…
Comment: Can Differential Isoform expression analysis can be performed using DESeq2 packa
by
priyanka.m
• 0
Thank you for the suggestions. I will try to compare my results and accordingly interpret the two.
Answer: [sva] Error in density.default(x, adjust = adj) : 'x' contains missing values
by
wahaha
• 0
I found the reason, because some gene expression levels are 0 in all samples. you can add these code to check the data: >exp_mean <- appl…
Answer: DESeq2 how to specify contrast to test difference of differences
by
Nicole
• 0
The comment from @mikelove about specifying numeric contrasts answered my question. This code is not standalone, but I will leave it here i…
Comment: DESeq2 how to specify contrast to test difference of differences
by
Nicole
• 0
Thank you, @mikelove - that did it! The results make sense now. From my original post, could you clarify what the `group1w.sexfemale` contr…
Votes
Answer: DESeq2 how to specify contrast to test difference of differences
Comment: DESeq2 how to specify contrast to test difference of differences
Answer: Confused about the design matrix in edgeR: How to tell R to consider one level a
Answer: biomaRt error unable to fix: need help troubleshooting
Answer: edgeR : results from goana and kegga functions show opposite sig. p-value
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