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viper
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517
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question on the p value for VIPER results by dorothea
RNAseq
VIPER
Doth
18 months ago
snowmattin
• 0
0
votes
0
replies
563
views
Using VIPER to compare protein activity in normal vs diseased samples
viper
2.2 years ago
tjbencomo
• 0
0
votes
2
replies
716
views
Trying to download VIPER
software error
viper
updated 4.4 years ago by
Steve Lianoglou
★ 13k • written 4.4 years ago by
rakhatib
• 0
4
votes
14
replies
3.3k
views
Data input for aracne2regulon function in viper package
viper
updated 11 weeks ago by
YNPAN910
• 0 • written 4.6 years ago by
maya.kappil
▴ 30
0
votes
0
replies
1.1k
views
VIPER (Protein Activity Inference) gene expression signature format
VIPER
aracne.networks
7.1 years ago
user31888
▴ 30
0
votes
1
reply
978
views
Use of Viper with a regulatory network built with my dataset or another one?
viper
aracne
regulatory network
aracne.networks
7.4 years ago
ldetorrente
▴ 10
6 results • Page
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Comment: limma models out of memory issue on Slurm HPC
by
Jitendra
▴ 10
thanks Gordon, but our methylation epic array input file is quite big and we can't read it in R by just using laptop memory so we need to …
Comment: Doing comparison of RNA-seq data using EdgeR
by
Michael Love
41k
Just to clarify, when I originally posted the title and tags had listed "DESeq2" and then the post was changed after my answer was added. …
Comment: fgsea fork
by
shepherl
3.8k
Not quite sure what you mean by clone or fork the package on latest version of R. Bioconductor runs all builds on the latest version of R.…
Answer: Doing comparison of RNA-seq data using EdgeR
by
Gordon Smyth
50k
It's pretty easy to do a two-group comparison using edgeR, but you seem to be stuck at the initial stage of reading data into R. If you exp…
Answer: Differing results from plotMDS and PCAtools
by
Gordon Smyth
50k
The reason why the two plots are different is that the first plot is a PCA plot while the second is a biplot. Quite different plots. The P…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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