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visualization
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11
votes
0
replies
5.8k
views
Tutorial:
Introduction to Bioconductor for high-throughput sequence analysis
GenomicRanges
Annotation
RNAseq
visualization
Tutorial
8.8 years ago
Martin Morgan
25k
8
votes
12
replies
8.6k
views
EdgeR: Explaning dispersion types to newbies
edger
dispersion
estimatedispersions
visualization
teaching
updated 5.8 years ago by
Aaron Lun
★ 28k • written 5.8 years ago by
Mr.RB
▴ 20
8
votes
0
replies
3.6k
views
Tutorial:
Statistics and Computing in Genome Science (CSAMA) Course Material
rnaseq
chipseq
visualization
metagenomics
proteomics
Tutorial
8.8 years ago
Martin Morgan
25k
7
votes
0
replies
3.7k
views
Tutorial:
New edX "Data analysis for Life Sciences" module: High performance computing for reproducible genomics
annotation
genomicranges
visualization
docker
shiny
Tutorial
8.1 years ago
Vincent J. Carey, Jr.
6.7k
5
votes
11
replies
1.5k
views
Visualization tool for GC-bias in SE data?
GC-bias
ALPINE
visualization
updated 3.8 years ago by
Michael Love
41k • written 3.8 years ago by
AKSR
▴ 20
5
votes
11
replies
2.9k
views
Visualization of negative log CPM values
Visualization
Normalization
ggplot2
edgeR
written 10 months ago by
Sabiha
▴ 20
4
votes
6
replies
1.4k
views
How to best visualize multi-level transcriptomics experiment data?
ggplot2
Transcriptomics
Visualization
R
limma
23 months ago
mohammedtoufiq91
▴ 10
3
votes
3
replies
1.1k
views
how to plot trends for differentialy expressed genes from normalized count matrix (EdgeR)
edger
clustering
visualization
updated 5.6 years ago by
James W. MacDonald
65k • written 5.6 years ago by
thindmarsmission
▴ 10
3
votes
0
replies
1.7k
views
News:
BioCAsia, 8 Sept 2015, Tokyo
sequencing
transcription
epigenomics
visualization
infrastructure
News
8.8 years ago • updated 8.7 years ago
Matthew Ritchie
▴ 1000
3
votes
5
replies
2.3k
views
Explanation of warning output of pathview regarding visualization of a KEGG pathway with Graphviz format
pathview
clusterProfiler
KEGGpath
visualization
Graphviz
updated 8.4 years ago by
Luo Weijun
★ 1.6k • written 8.4 years ago by
svlachavas
▴ 830
2
votes
0
replies
1.2k
views
Interactive Visualization with Epivizr (what's new in this release)
epivizr
visualization
9.5 years ago
Hector Corrada Bravo
▴ 60
2
votes
2
replies
4.2k
views
How can I visualize Gene Set Enrichment Results from gseGo fun. (clusterProfiler)?
ggplot2
clusterprofiler
visualization
gseGo
7.0 years ago • updated 3.4 years ago
tcalvo
▴ 90
2
votes
2
replies
1.1k
views
What can be done to separate the healthy and patient samples in PCA plot and Distance matrix
deseq2
PCAplot
Visualization
updated 5.3 years ago by
Michael Love
41k • written 5.3 years ago by
Mithil Gaikwad
• 0
2
votes
1
reply
3.5k
views
Heatmap function
Visualization
Visualization
updated 20.5 years ago by
Furge, Kyle
▴ 210 • written 20.5 years ago by
Marcus
▴ 150
2
votes
4
replies
1.6k
views
chimeraviz - import own fusion file for visualization
visualization
chimeraviz
updated 2.7 years ago by
Iman
• 0 • written 6.8 years ago by
verena.tischler
▴ 10
2
votes
2
replies
1.2k
views
Can't display protein domain data from UCSC table unipDomain using Gviz
Gviz
protein
visualization
UcscTrack
protein domains
updated 3.6 years ago by
James W. MacDonald
65k • written 3.6 years ago by
paul.jaschke
▴ 10
2
votes
1
reply
2.1k
views
ggbio: examples of overlaying multiple assay datasets
ggbio
visualization
ggbio
updated 9.6 years ago by
Panagiotis Moulos
▴ 30 • written 9.6 years ago by
Abhishek Pratap
▴ 190
1
vote
0
replies
1.9k
views
Job:
PhD position - Heidelberg: Bioinformatic analysis of high-throughput and image-based RNAi screening data
high-throughput screening
RNAi
image analysis
data integration
visualization
Job
9.1 years ago
e.schmidt
▴ 10
1
vote
0
replies
939
views
SIM new package for Statistical Integration of Microarrays
SNP
Microarray
Visualization
Cancer
SNP
Microarray
Visualization
Cancer
15.6 years ago
Maarten van Iterson
▴ 60
1
vote
1
reply
1.1k
views
News:
SBGNview: Data Analysis, Integration and Visualization on 5000+ Pathways/3000+ Species
SBGNview
pathways
SBGNview.data
pathview
visualization
3.1 years ago
Luo Weijun
★ 1.6k
1
vote
2
replies
1.2k
views
Package for custom visualization of multiple sequence alignment
MSA
visualization
updated 5.5 years ago by
ulrich.bodenhofer
▴ 20 • written 5.5 years ago by
tim.ivanov.92
• 0
1
vote
3
replies
1.7k
views
copy number variation analysis (CNV)
copynumber
plot
visualization
NGS
gene
updated 3.4 years ago by
Ram
▴ 190 • written 3.5 years ago by
sijing.gsj
• 0
1
vote
3
replies
1.9k
views
Visualizing gene counts and variance stabilization
deseq2
rnaseq
variancestabilizingtransformation
visualization
updated 8.8 years ago by
Michael Love
41k • written 8.8 years ago by
ysdel
▴ 40
1
vote
0
replies
1.5k
views
News:
BioCAsia, 4th November 2016, Brisbane, Australia
conference
transcription
epigenomics
visualization
infrastructure
News
7.8 years ago
Matthew Ritchie
▴ 1000
1
vote
1
reply
1.4k
views
Visualizing Structural variants
visualization
SV
updated 9.0 years ago by
Vincent J. Carey, Jr.
6.7k • written 9.0 years ago by
Abhishek Pratap
▴ 190
1
vote
1
reply
2.3k
views
Using DESeq2: experimental design and extracting results
Visualization
DESeq
DESeq2
Visualization
DESeq
DESeq2
updated 9.7 years ago by
Michael Love
41k • written 9.7 years ago by
bio2001
▴ 60
1
vote
0
replies
1.7k
views
Pathview and GAGE now work with essentially all KEGG species
Visualization
gage
pathview
Visualization
gage
pathview
10.5 years ago
Luo Weijun
★ 1.6k
1
vote
2
replies
2.7k
views
gene expression visualization: lineplot with ggplot2
ggplot2
lineplot
visualization
updated 8.9 years ago by
Jeremy Ng
▴ 180 • written 8.9 years ago by
alakatos
▴ 130
0
votes
0
replies
1.3k
views
visualizing limma results
Visualization
limma
Visualization
limma
18.3 years ago
daniela.marconi@libero.it
▴ 100
0
votes
0
replies
820
views
Bug in maNormNN
Microarray
Normalization
GO
Visualization
Network
nnNorm
Microarray
Normalization
GO
18.4 years ago
Tarca, Adi
▴ 570
0
votes
1
reply
1.0k
views
Several questions goCluster and GOstats...
Annotation
GO
Visualization
Yeast
goCluster
Annotation
GO
Visualization
Yeast
goCluster
updated 18.6 years ago by
Gunnar Wrobel
▴ 60 • written 18.6 years ago by
Lourdes Peña Castillo
▴ 140
0
votes
0
replies
711
views
last call, registrations for Boston Bioconductor Training, 21-23 July 2005
Annotation
Preprocessing
Visualization
Annotation
Preprocessing
Visualization
18.8 years ago
Vincent J. Carey, Jr.
6.7k
0
votes
0
replies
997
views
Conference announcement: Compstat 2004
Visualization
Bayesian
Classification
Clustering
Regression
Visualization
Bayesian
20.5 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
1.2k
views
Bioconductor 2.9 is released
Transcription
Sequencing
miRNA
qPCR
Proteomics
Annotation
Normalization
Visualization
cdf
12.5 years ago
Dan Tenenbaum
★ 8.2k
0
votes
1
reply
711
views
comparative genomics
Visualization
Visualization
updated 18.9 years ago by
Sean Davis
21k • written 18.9 years ago by
Sorani, Marco
▴ 30
0
votes
0
replies
686
views
Boston Bioc Training July 2005 Registration open
Annotation
Preprocessing
Visualization
Annotation
Preprocessing
Visualization
18.9 years ago
Vincent J. Carey, Jr.
6.7k
0
votes
0
replies
1.3k
views
InfoVis 2003 Call for Papers
Visualization
PROcess
Category
Visualization
PROcess
Category
21.2 years ago
rgentleman
★ 5.5k
0
votes
0
replies
788
views
Bioc Training: 21-23 July 2005, Boston
Annotation
Preprocessing
Visualization
Annotation
Preprocessing
Visualization
18.9 years ago
Vincent J. Carey, Jr.
6.7k
0
votes
1
reply
1.0k
views
status of visnab
Visualization
ggbio
Gviz
Visualization
ggbio
Gviz
updated 11.0 years ago by
Tengfei Yin
▴ 420 • written 11.0 years ago by
Abhishek Pratap
▴ 410
0
votes
2
replies
897
views
ANN: Bioconductor short course June 1-3 in Seattle
Preprocessing
Visualization
Cancer
Preprocessing
Visualization
Cancer
19.0 years ago
Seth Falcon
★ 7.4k
0
votes
0
replies
1.1k
views
qPCR 2009 Event Agenda Online
SNP
qPCR
Normalization
Visualization
Regression
Cancer
probe
microRNA
SNP
qPCR
Cancer
15.2 years ago
qPCR Platform - the reference in real-t…
▴ 170
0
votes
0
replies
966
views
in case you have a visualization paper to submit
Microarray
Alignment
Pathways
Visualization
Microarray
Alignment
Pathways
Visualization
17.1 years ago
Vincent J. Carey, Jr.
6.7k
0
votes
3
replies
1.5k
views
Bioconductor 2.3 is released
aCGH
Sequencing
miRNA
Microarray
Visualization
Bayesian
Classification
Survival
Yeast
LPE
15.5 years ago
Patrick Aboyoun
★ 1.6k
0
votes
1
reply
1.9k
views
Entrez Gene ID to Probe Set Name
aCGH
Sequencing
miRNA
Microarray
Annotation
Normalization
GO
Preprocessing
Visualization
updated 15.5 years ago by
Marc Carlson
★ 7.2k • written 15.5 years ago by
McGee, Monnie
▴ 300
0
votes
0
replies
600
views
Problem loadin repsTools
Visualization
affy
Visualization
affy
19.1 years ago
Zhi-Wei Lu
▴ 10
0
votes
1
reply
838
views
Visualization of multiple alignments in bioconductor
Genetics
Visualization
Genetics
Visualization
updated 15.8 years ago by
Martin Morgan
25k • written 15.8 years ago by
Schraga Schwartz
▴ 10
0
votes
1
reply
1.1k
views
Color in the lefs of a dendrogram?
Visualization
Clustering
Visualization
Clustering
updated 19.5 years ago by
Martin Maechler
▴ 330 • written 19.5 years ago by
Johan Lindberg
▴ 270
0
votes
0
replies
1.2k
views
Talk & Poster Call - qPCR 2009 Event
SNP
qPCR
Normalization
Visualization
Regression
Cancer
probe
PROcess
microRNA
SNP
qPCR
15.4 years ago
qPCR Platform - the reference in real-t…
▴ 170
0
votes
1
reply
1.3k
views
Talk & Poster - Final Call - qPCR 2009 Event
SNP
qPCR
Normalization
Visualization
Regression
Cancer
probe
PROcess
microRNA
SNP
qPCR
15.4 years ago • updated 15.3 years ago
qPCR Platform - the reference in real-t…
▴ 170
0
votes
0
replies
1.3k
views
job advertisement
Genetics
Alignment
Visualization
Genetics
Alignment
Visualization
10.8 years ago
Zhenyu Xu
▴ 10
50 results • Page
1 of 1
Recent ...
Replies
Answer: OrgDb for maize
by
Guido Hooiveld
★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question
by
Garrett
• 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
sropri
• 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
alserg
▴ 240
They are reorder in the decreasing order.
Comment: significant difference of p-values with dream() after updating VariancePartition
by
Le
• 0
Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…
Votes
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos
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