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volcanoplot
•
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0
votes
4
replies
1.1k
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Volcano plot becomes flipped when I add a third condition
DESeq2
volcanoplot
deseq
HELP
contrast
updated 13 months ago by
Basti
▴ 750 • written 13 months ago by
Michael
• 0
0
votes
1
reply
725
views
part of the volcano plot does not appear.
plot
volcano
volcanoplot
updated 13 months ago by
Basti
▴ 750 • written 13 months ago by
Sooni
▴ 10
0
votes
1
reply
550
views
Assigning the name of top 100 DE transcripts/genes to Volcano plot
limma
DEGreport
Volcanoplot
updated 15 months ago by
Gordon Smyth
50k • written 15 months ago by
Mohammad
• 0
3
votes
5
replies
2.0k
views
Volcano plot - select additional gene
EnhancedVolcano
RNASeqR
R
volcanoplot
updated 3.4 years ago by
Kevin Blighe
★ 3.9k • written 3.4 years ago by
camillab.
▴ 10
1
vote
5
replies
2.3k
views
Why the p value and logFC calculated by limma is so small
limma
volcanoplot
pvalue
logFC
updated 5.0 years ago by
Gordon Smyth
50k • written 5.1 years ago by
xingxd16
▴ 20
0
votes
4
replies
6.8k
views
Limma Volcano Plot Highlight Top Genes by Color
limma
microarray
volcanoplot
color
updated 5.5 years ago by
Gordon Smyth
50k • written 5.5 years ago by
dmm204
• 0
2
votes
4
replies
7.2k
views
Volcano Plot (highlighting top genes in a different color)
volcanoplot
updated 6.4 years ago by
thokall
▴ 160 • written 6.4 years ago by
Nithisha
▴ 10
0
votes
1
reply
996
views
Pseudo-coloring DiffBind volcano plot
diffbind
chipseq
volcanoplot
ggplot2
updated 6.5 years ago by
Rory Stark
★ 5.1k • written 6.5 years ago by
rbronste
▴ 60
0
votes
2
replies
1.7k
views
Draw volcano plot by modifying contrast matrix (lumi package)
volcanoplot
design and contrast matrix
updated 6.5 years ago by
Gordon Smyth
50k • written 6.5 years ago by
marongiu.luigi
• 0
10
votes
3
replies
8.7k
views
Volcanoplot with limma - RAW P-values or Adj.P-Values
volcanoplot
limma
fdr
6.7 years ago • updated 3.4 years ago
tcalvo
▴ 90
0
votes
2
replies
1.2k
views
volcano plot in Limma
limma
volcanoplot
updated 7.9 years ago by
Aaron Lun
★ 28k • written 7.9 years ago by
mheydarpour
▴ 10
7
votes
4
replies
5.6k
views
Gene symbols on MA-plot
limma
plot.MA
volcanoplot
oligo
updated 8.7 years ago by
Gordon Smyth
50k • written 8.7 years ago by
Gabriel Nathan Kaufman, Mr
▴ 60
2
votes
2
replies
3.0k
views
cummeRbund change point size in volcano plot
cummerbund
ggplot2
size
r
volcanoplot
updated 9.3 years ago by
James W. MacDonald
65k • written 9.3 years ago by
ianmisner17
▴ 20
5
votes
4
replies
6.7k
views
Volcano plot labeling troubles
limma
volcanoplot
updated 6.7 years ago by
Gordon Smyth
50k • written 9.4 years ago by
mccallionc403
• 0
14 results • Page
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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