Biostar Volcanoplot

Showing : volcanoplot • reset

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581

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EnhancedVolcano RNASeqR R volcanoplot

updated 20 months ago by Kevin Blighe 3.5k • written 20 months ago by camillab. ▴ 10

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1.1k

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limma volcanoplot pvalue logFC

updated 3.3 years ago by Gordon Smyth 45k • written 3.3 years ago by xingxd16 ▴ 20

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5.5k

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limma volcanoplot

updated 4.9 years ago by Gordon Smyth 45k • written 7.7 years ago by mccallionc403 • 0

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4.5k

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limma plot.MA volcanoplot oligo

updated 7.0 years ago by Gordon Smyth 45k • written 7.0 years ago by Gabriel Nathan Kaufman, Mr ▴ 60

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5.8k

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volcanoplot

updated 4.6 years ago by thokall ▴ 160 • written 4.6 years ago by Nithisha ▴ 10

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4.2k

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limma microarray volcanoplot color

updated 3.7 years ago by Gordon Smyth 45k • written 3.7 years ago by dmm204 • 0

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4.9k

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volcanoplot limma fdr

4.9 years ago • updated 19 months ago tcalvo ▴ 70

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771

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limma volcanoplot

updated 6.2 years ago by Aaron Lun ★ 27k • written 6.2 years ago by mheydarpour ▴ 10

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2.4k

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cummerbund ggplot2 size r volcanoplot

updated 7.6 years ago by James W. MacDonald 60k • written 7.6 years ago by ianmisner17 ▴ 20

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1.1k

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volcanoplot design and contrast matrix

updated 4.8 years ago by Gordon Smyth 45k • written 4.8 years ago by marongiu.luigi • 0

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590

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diffbind chipseq volcanoplot ggplot2

updated 4.7 years ago by Rory Stark ★ 4.4k • written 4.7 years ago by rbronste ▴ 60

11 results • Page 1 of 1

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Comment: VariantAnnotation R Package - Merging Two VCF files by didanax972 • 0

In case you like to merge the numerous VCF files into a single file then you should opt for the VCF Merger tool. This tool is a dedicated a…

Comment: merging VCF files by didanax972 • 0

Use Merge VCF a quick and instant solution to combine multiple VCF files into a new VCF file. The tool effortlessly merges multiple VCF fil…

Comment: Error: DESeq(dds , useT = TRUE, minmu = 1e-06, test = "LRT", : likelih by ATpoint ★ 1.3k

Would you mind reading the vignette towards how the LRT works: http://bioconductor.org/packages/devel/bioc/vignettes/DESeq2/inst/doc/DESeq2…

Comment: cellCounts() function floating point error by Yang Liao ▴ 340

Thanks for the report but the error cannot be reproduced. We tested `Rsubread` 2.10.3 in `R` 4.2.0 and `Bioconductor` 3.15, and `cellCounts…

Comment: rtracklayer export GRangesList as gtf and change attributes by James • 0

I have found a way to export a GTF so that the 3rd column no longer lists **sequence_feature** but instead lists the feature, such as **exo…

Votes

C: DESeq2 lfcShrink() usage of coef vs. usage of contrast

Comment: Using Age or other numerical variable to model expression in deseq2

Answer: Using Age or other numerical variable to model expression in deseq2

Awards • All

Scholar to James W. MacDonald 60k

Teacher to Michael Love 37k