Bioconductor Volcanoplot

Showing : volcanoplot • reset

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1.2k

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DESeq2 volcanoplot deseq HELP contrast

updated 14 months ago by Basti ▴ 770 • written 14 months ago by Michael • 0

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754

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plot volcano volcanoplot

updated 14 months ago by Basti ▴ 770 • written 14 months ago by Sooni ▴ 10

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570

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limma DEGreport Volcanoplot

updated 15 months ago by Gordon Smyth 50k • written 15 months ago by Mohammad • 0

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2.0k

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EnhancedVolcano RNASeqR R volcanoplot

updated 3.5 years ago by Kevin Blighe ★ 3.9k • written 3.5 years ago by camillab. ▴ 10

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2.3k

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limma volcanoplot pvalue logFC

updated 5.1 years ago by Gordon Smyth 50k • written 5.1 years ago by xingxd16 ▴ 20

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6.8k

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limma microarray volcanoplot color

updated 5.5 years ago by Gordon Smyth 50k • written 5.5 years ago by dmm204 • 0

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7.2k

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volcanoplot

updated 6.4 years ago by thokall ▴ 160 • written 6.5 years ago by Nithisha ▴ 10

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1.0k

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diffbind chipseq volcanoplot ggplot2

updated 6.5 years ago by Rory Stark ★ 5.1k • written 6.5 years ago by rbronste ▴ 60

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1.7k

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volcanoplot design and contrast matrix

updated 6.6 years ago by Gordon Smyth 50k • written 6.6 years ago by marongiu.luigi • 0

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8.9k

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volcanoplot limma fdr

6.7 years ago • updated 3.4 years ago tcalvo ▴ 90

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6.7k

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limma volcanoplot

updated 6.7 years ago by Gordon Smyth 50k • written 9.5 years ago by mccallionc403 • 0

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1.2k

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limma volcanoplot

updated 8.0 years ago by Aaron Lun ★ 28k • written 8.0 years ago by mheydarpour ▴ 10

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5.7k

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limma plot.MA volcanoplot oligo

updated 8.8 years ago by Gordon Smyth 50k • written 8.8 years ago by Gabriel Nathan Kaufman, Mr ▴ 60

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3.1k

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cummerbund ggplot2 size r volcanoplot

updated 9.4 years ago by James W. MacDonald 65k • written 9.4 years ago by ianmisner17 ▴ 20

14 results • Page 1 of 1

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Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k

I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …

Comment: Theoretical WGCNA Question by Garrett • 0

Thanks Peter!

Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0

Thank you!

Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240

They are reorder in the decreasing order.

Comment: significant difference of p-values with dream() after updating VariancePartition by Le • 0

Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…

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Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos

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