Bioconductor VoomLmFit

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edgeR voomLmFit limma duplicateCorrelation voom

updated 6 weeks ago by Gordon Smyth 52k • written 3.0 years ago by altintas.ali • 0

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limma duplicateCorrelation edgeR modelMatrixMeth voomLmFit

7 weeks ago • updated 5 weeks ago altintas.ali • 0

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Comment: sva: get a sv for RIN scores by gabriel.hoffman ▴ 170

Agreed. I'll add that with small sample size, a covariate can explain some fraction of expression variation even under the null.

Comment: RSubread output significantly different from bash Subread output by Aimee • 0

Thank you! I will try rerunning with that parameter and see if it fixes the discrepancy! I'll report back. Update: This completely resolve…

Answer: RSubread output significantly different from bash Subread output by ATpoint ★ 4.6k

The R version counts multimappers (countMultiMappingReads is TRUE by default) while the command line version does not. It's beyond me why t…

Comment: Can't post a question? by Aimee • 0

I copied my text to a file in linux and ran: ```r grep --color='auto' -P -n "[^\x00-\x7F]" filename.txt ``` It highlighted everything that…

Answer: sva: get a sv for RIN scores by Gordon Smyth 52k

Surrogate variables are not constructed from known variates, so one doesn't get surrogate variables for RIN scores. I am guessing that the …

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