Bioconductor VoomWithQualityWeights

Showing : voomWithQualityWeights • reset

votes

replies

2.4k

views

limma RNA-Seq voom voomWithQualityWeights edgeR

updated 4.1 years ago by Gordon Smyth 50k • written 4.1 years ago by pedrodcb ▴ 10

votes

replies

979

views

limma voom RNA-seq voomWithQualityWeights

updated 4.9 years ago by Matthew Ritchie ▴ 1000 • written 4.9 years ago by Julien Roux ▴ 90

votes

replies

1.1k

views

limma lmfit voom limma design matrix voomwithqualityweights

updated 5.3 years ago by Gordon Smyth 50k • written 5.3 years ago by kediggins ▴ 10

votes

replies

1.5k

views

limma t-statistic voom voomwithqualityweights robust regression

5.4 years ago brynedal ▴ 40

votes

replies

2.1k

views

voomwithqualityweights limma voom duplicatecorrelation

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.8 years ago by BharathAnanth ▴ 80

votes

replies

2.9k

views

limma voomwithqualityweights gene set analysis

updated 6.0 years ago by Aaron Lun ★ 28k • written 6.0 years ago by BharathAnanth ▴ 80

votes

4.0k

views

voom limma-voom voomwithqualityweights rna-seq

updated 6.2 years ago by Matthew Ritchie ▴ 1000 • written 6.2 years ago by anne.biton ▴ 20

votes

replies

4.2k

views

voomWithQualityWeights output

updated 6.4 years ago by Gordon Smyth 50k • written 6.4 years ago by harelarik ▴ 60

votes

replies

1.3k

views

limma edger voom voomWithQualityWeights limma-voom

updated 6.4 years ago by Gordon Smyth 50k • written 6.4 years ago by Guido Hooiveld ★ 3.9k

9 results • Page 1 of 1

Recent ...

Replies

Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k

I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …

Comment: Theoretical WGCNA Question by Garrett • 0

Thanks Peter!

Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0

Thank you!

Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240

They are reorder in the decreasing order.

Comment: significant difference of p-values with dream() after updating VariancePartition by Le • 0

Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…

Votes

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos

Awards • All