Bioconductor Voomwithqualityweights

Showing : voomwithqualityweights • reset

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1.4k

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limma RNA-Seq voom voomWithQualityWeights edgeR

updated 3.2 years ago by Gordon Smyth 47k • written 3.2 years ago by pedrodcb • 0

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702

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limma voom RNA-seq voomWithQualityWeights

updated 4.0 years ago by Matthew Ritchie ▴ 1000 • written 4.0 years ago by Julien Roux ▴ 90

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791

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limma lmfit voom limma design matrix voomwithqualityweights

updated 4.5 years ago by Gordon Smyth 47k • written 4.5 years ago by kediggins ▴ 10

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1.1k

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limma t-statistic voom voomwithqualityweights robust regression

4.5 years ago brynedal ▴ 30

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1.6k

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voomwithqualityweights limma voom duplicatecorrelation

updated 4.9 years ago by Aaron Lun ★ 28k • written 4.9 years ago by BharathAnanth ▴ 70

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2.3k

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limma voomwithqualityweights gene set analysis

updated 5.2 years ago by Aaron Lun ★ 28k • written 5.2 years ago by BharathAnanth ▴ 70

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3.2k

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voom limma-voom voomwithqualityweights rna-seq

updated 5.3 years ago by Matthew Ritchie ▴ 1000 • written 5.3 years ago by anne.biton ▴ 20

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3.5k

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voomWithQualityWeights output

updated 5.5 years ago by Gordon Smyth 47k • written 5.5 years ago by harelarik ▴ 60

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953

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limma edger voom voomWithQualityWeights limma-voom

updated 5.5 years ago by Gordon Smyth 47k • written 5.5 years ago by Guido Hooiveld ★ 3.6k

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Comment: Filtering low intensity probes in microarray data by trendyca09 • 0

I have the same issues. I want to post a write to ask everyone. So, I find your post. I can get the best answer. [geometry dash scratch][1]…

Comment: Can DESeq2 handle huge variations in sequencing depth among samples? by Gopinath • 0

Thanks for your suggestion, Michael. I will try that strategy.

Comment: Error with IsoformSwitchAnalyzer: analyzePFAM by Callum • 0

It seems that the problem doesn't occur when the input file is significantly shortened to ~20 transcripts! Please help

Comment: Recount3 data correspond to TCGA data by seline.natalie • 0

I want to add to this question, the recount3 repository uses other sampleIDs then TCGA. I know that before the IDs could be converted by us…

Comment: BAM files to Genomic Ranges object by guanliyun081 • 0

First of all I want to thank Herve Pages and Martin Morgan for their kind >> answers. And I want to apologize for this delay answering back…

Votes

A: ggbio error: Objects of type OrganismDb not supported by autoplot

Answer: DeSEQ 2 Error: some values in assay are negative

DESeq2 Error from Installing a Package

Answer: Using PEER to identify hidden confounders in RNA-seq data (not working)

Comment: Error: biomaRt has encountered an unexpected server error.

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