Biostar Voomwithqualityweights

Showing : voomwithqualityweights • reset

votes

replies

3.3k

views

voomWithQualityWeights output

updated 5.3 years ago by Gordon Smyth 47k • written 5.3 years ago by harelarik ▴ 60

votes

replies

1.0k

views

limma t-statistic voom voomwithqualityweights robust regression

4.3 years ago brynedal ▴ 30

votes

replies

1.2k

views

limma RNA-Seq voom voomWithQualityWeights edgeR

updated 3.0 years ago by Gordon Smyth 47k • written 3.0 years ago by pedrodcb • 0

votes

replies

1.5k

views

voomwithqualityweights limma voom duplicatecorrelation

updated 4.7 years ago by Aaron Lun ★ 28k • written 4.7 years ago by BharathAnanth ▴ 70

votes

replies

2.1k

views

limma voomwithqualityweights gene set analysis

updated 5.0 years ago by Aaron Lun ★ 28k • written 5.0 years ago by BharathAnanth ▴ 70

votes

replies

876

views

limma edger voom voomWithQualityWeights limma-voom

updated 5.3 years ago by Gordon Smyth 47k • written 5.3 years ago by Guido Hooiveld ★ 3.6k

votes

replies

740

views

limma lmfit voom limma design matrix voomwithqualityweights

updated 4.2 years ago by Gordon Smyth 47k • written 4.3 years ago by kediggins ▴ 10

votes

replies

639

views

limma voom RNA-seq voomWithQualityWeights

updated 3.8 years ago by Matthew Ritchie ▴ 1000 • written 3.8 years ago by Julien Roux ▴ 90

votes

3.0k

views

voom limma-voom voomwithqualityweights rna-seq

updated 5.1 years ago by Matthew Ritchie ▴ 1000 • written 5.1 years ago by anne.biton ▴ 20

9 results • Page 1 of 1

Recent ...

Replies

Comment: Time-course, comparison of two groups by Gordon Smyth 47k

With 4 time points there are 3 df between time points, so your spline analysis with `df=3` is exactly the same as if you had treated time a…

Comment: Does DiffBind make consensus peaks sets for samples from a given condition (e.g. by tahir.msajid • 0

Hi Rory, I am normalizing the counts with the following options: `normalized <- dba.normalize(counts, method=DBA_DESEQ2, normalize = DBA_N…

Answer: [limma::kegga] Pathway names all NA by Gordon Smyth 47k

This is due to a change in the KEGG website. I updated limma a month ago to fix the problem, so just reinstall limma and the problem will b…

Comment: Does DiffBind make consensus peaks sets for samples from a given condition (e.g. by tahir.msajid • 0

That's great. Thank you for clarifying the confusion. Cheers,

Comment: minfi support of illumina Infinium methylationEPIC v2.0 by luca.s ▴ 40

Tank you James. All fine, but for preprocessIllumina, which apparently won't work

Votes

Answer: minfi support of illumina Infinium methylationEPIC v2.0

Answer: Are polynomial contrasts for a time factor possible in DESeq2?

Are polynomial contrasts for a time factor possible in DESeq2?

Answer: How to deal with the negative values from EBPlusPlusAdjustPANCAN_IlluminaHiSeq_R

Comment: TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from va

Awards • All

Scholar to Gordon Smyth 47k

Popular Question to Robert Castelo ★ 3.0k