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DESeq2 log2FC vst()

updated 12 weeks ago by ATpoint ★ 4.4k • written 12 weeks ago by lifeonmars • 0

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Comment: When doing differential methylation using the sesame package, seems to only go by James W. MacDonald 67k

The odds ratio, not log FC. My bad.

Comment: When doing differential methylation using the sesame package, seems to only go by James W. MacDonald 67k

``` testResult$Eff_Condition > 0.1 ```

Comment: clusterProfiler: BgRatio N value does not match the size of the gene universe th by Fatima • 0

I identified 3804 genes with GO annotations. I put my liste of genes in this link [enter link description here][1] universe <- mapIds…

Comment: When doing differential methylation using the sesame package, seems to only go by ramiro.barrantes ▴ 10

Hello, Thank you. I absolutely respect what you mention about p-values and logFC, I was just going to tackle that soon and thank you for po…

Comment: QSEA:Error in h(simpleError(msg, call)) by kf • 0

genome(qseaSet@regions)<-"BSgenome.Hsapiens.UCSC.hg38" solve the problem

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Answer: object 'hdac_targets' not found

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