Bioconductor Wald

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18k

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deseq2 wald

updated 2.4 years ago by Michael Love 41k • written 9.1 years ago by deena ▴ 20

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1.2k

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deseq2 ribosome profiling wald lrt

updated 5.3 years ago by Michael Love 41k • written 5.3 years ago by indrik.wijaya ▴ 20

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932

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DESeq2 wald stat

updated 19 months ago by Peter Hickey ▴ 740 • written 19 months ago by eve.olszanowski • 0

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2.6k

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deseq2 wald lrt genes significance

updated 7.8 years ago by Michael Love 41k • written 7.8 years ago by aziza ▴ 20

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1.5k

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etLRT WALD edgeR DESEq

updated 2.7 years ago by Michael Love 41k • written 2.7 years ago by aiswaryabioinfo • 0

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4.0k

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rnaseq deseq2 lrt wald differential gene expression

updated 2.1 years ago by krushnach80 • 0 • written 6.6 years ago by chrysanthi.taxiarchi12 • 0

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1.8k

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deseq2 LRT WALD

updated 4.7 years ago by Michael Love 41k • written 4.7 years ago by annesoalvarez • 0

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976

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GENESIS zscore wald

updated 4.5 years ago by Stephanie M. Gogarten ▴ 870 • written 4.5 years ago by lassana.a.samarakoon ▴ 10

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687

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deseq2 LRT wald

updated 4.1 years ago by Kevin Blighe ★ 3.9k • written 4.1 years ago by jnaviapelaez ▴ 10

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Comment: Input Question for deseq.r by ATpoint ★ 4.0k

It is unclear what "deseq.r" is. It is not part of DESeq2, and almost certainly no part of RSeqAn. Please add details, and keep in mind tha…

Answer: DESEQ2 output gives multiple groups when only 2 groups are present by ATpoint ★ 4.0k

In the first PCA plot there is almost certainly some hidden character like whitespaces in the column from colData that encodes this group. …

Answer: A ComBat-seq issue: the covariates are confounded by ATpoint ★ 4.0k

```r > table(batch, group) group batch egfr gfp her2 1 0 12 5 2 6 6 0 ``` All of her2 is batch2, all of egfr i…

Comment: DESeq2 setting significant p-value by Dev • 0

after running DESeq2 does it sort the value on the basis of pvalue, or anything, or does it give the data back in the input format I have …

Comment: DESeq filtering specific to contrasts by Carlin95 • 0

But wouldn't this result in a different gene set for each analysis stratification? How can you then compare if maybe gene x comes up in Tim…

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Comment: Reading huge bismark coverage files using bbseq::read.bismark

Answer: Reading huge bismark coverage files using bbseq::read.bismark

Answer: How many of my genes from my gene list are in each KEGG pathway?

Comment: Light difference when using coef vs omit a group when compare 3 groups.

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