Bioconductor Wald

Showing : wald • reset

votes

replies

18k

views

deseq2 wald

updated 2.5 years ago by Michael Love 41k • written 9.2 years ago by deena ▴ 20

votes

replies

4.0k

views

rnaseq deseq2 lrt wald differential gene expression

updated 2.1 years ago by krushnach80 • 0 • written 6.6 years ago by chrysanthi.taxiarchi12 • 0

votes

replies

2.6k

views

deseq2 wald lrt genes significance

updated 7.9 years ago by Michael Love 41k • written 7.9 years ago by aziza ▴ 20

vote

1.8k

views

deseq2 LRT WALD

updated 4.7 years ago by Michael Love 41k • written 4.7 years ago by annesoalvarez • 0

votes

replies

1.5k

views

etLRT WALD edgeR DESEq

updated 2.7 years ago by Michael Love 41k • written 2.7 years ago by aiswaryabioinfo • 0

votes

replies

1.2k

views

deseq2 ribosome profiling wald lrt

updated 5.3 years ago by Michael Love 41k • written 5.3 years ago by indrik.wijaya ▴ 20

vote

985

views

GENESIS zscore wald

updated 4.5 years ago by Stephanie M. Gogarten ▴ 870 • written 4.5 years ago by lassana.a.samarakoon ▴ 10

vote

replies

940

views

DESeq2 wald stat

updated 19 months ago by Peter Hickey ▴ 740 • written 19 months ago by eve.olszanowski • 0

vote

692

views

deseq2 LRT wald

updated 4.1 years ago by Kevin Blighe ★ 3.9k • written 4.1 years ago by jnaviapelaez ▴ 10

9 results • Page 1 of 1

Recent ...

Replies

Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0

How am i making the data? I am using the DESeq2 output data which I had generated

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq by Michael Love 41k

Sounds reasonable. For ranking genes, you could choose those with low decay rate but removing thoses where it is indistinguishable from …

Answer: Citation for edgeR user guide by Gordon Smyth 50k

Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

You are just making up data? What is the point of this exercise?

Comment: How to retrieve gene ontology GO class? by James W. MacDonald 65k

What do you mean by 'the information'? Do you have things in particular that you want?

Votes

Answer: Citation for edgeR user guide

Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)

Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.

Answer: minfi::read.metharray.exp

Comment: Trying to use enrichGO

Awards • All