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warnings
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2
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12
replies
2.3k
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Synapter - makeMaster() and synergise() functions warnings/fails
software error
warnings
synapter
9.4 years ago
sogueta
• 0
4
votes
6
replies
2.0k
views
Can I ignore the warnings in limma show " Coefficients not estimable" after batch correct ?
limma
batchcorrect
warnings
updated 5.1 years ago by
Aaron Lun
★ 28k • written 5.1 years ago by
xingxd16
▴ 20
1
vote
3
replies
1.6k
views
DEXSeq warnings for millions of reads
DEXSeq
warnings
dexseq_count
updated 8.0 years ago by
Darya Vanichkina
▴ 120 • written 8.0 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
2
replies
1.6k
views
DESeq2 doubts about transformations + nbinomWaldtest warning
rna-seq
deseq2
warnings
nbinomWaldTest
transformation
updated 3.8 years ago by
Michael Love
41k • written 3.8 years ago by
andreia
▴ 10
1
vote
2
replies
1.3k
views
Mysterious warning message: "...in .local... ignoring 'pos' argument
warnings
gostats
updated 9.0 years ago by
James W. MacDonald
65k • written 9.0 years ago by
jon.young
• 0
0
votes
1
reply
1.5k
views
R CMD check S3 generic/method consistency WARNING
cmd check
warnings
s3
updated 7.7 years ago by
Gordon Smyth
50k • written 7.7 years ago by
anthonycolombo60
• 0
6 results • Page
1 of 1
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Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR)
by
marka
• 0
As a single dad in Australia, finding time to unwind is rare, but [Lincoln Casino][1] has become my go-to escape after putting the kids to …
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
swbarnes2
★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error
by
James W. MacDonald
65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Comment: get BM error
by
Fara
• 0
Thank you for your response. The primary reason for translating Ensembl IDs into Entrez Gene IDs is to perform KEGG (Kyoto Encyclopedia of…
Votes
Answer: get BM error
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
Comment: Different Shrunk Log2FC according with reference
Reproducibility issue with scran together with lapply and BiocParallel
C: SGSeq: moving toward diffex from SGSeq analysis
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