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Can I ignore the warnings in limma show " Coefficients not estimable" after batch correct ?
limma
batchcorrect
warnings
updated 5.1 years ago by
Aaron Lun
★ 28k • written 5.1 years ago by
xingxd16
▴ 20
2
votes
12
replies
2.3k
views
Synapter - makeMaster() and synergise() functions warnings/fails
software error
warnings
synapter
9.4 years ago
sogueta
• 0
1
vote
2
replies
1.3k
views
Mysterious warning message: "...in .local... ignoring 'pos' argument
warnings
gostats
updated 9.0 years ago by
James W. MacDonald
65k • written 9.0 years ago by
jon.young
• 0
1
vote
3
replies
1.6k
views
DEXSeq warnings for millions of reads
DEXSeq
warnings
dexseq_count
updated 8.0 years ago by
Darya Vanichkina
▴ 120 • written 8.0 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
2
replies
1.6k
views
DESeq2 doubts about transformations + nbinomWaldtest warning
rna-seq
deseq2
warnings
nbinomWaldTest
transformation
updated 3.8 years ago by
Michael Love
41k • written 3.8 years ago by
andreia
▴ 10
0
votes
1
reply
1.5k
views
R CMD check S3 generic/method consistency WARNING
cmd check
warnings
s3
updated 7.7 years ago by
Gordon Smyth
50k • written 7.7 years ago by
anthonycolombo60
• 0
6 results • Page
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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Chris
• 0
Hi Robert, If I don't want to use all pathway in c2 gene set but only a few pathways of interested, how can I do that? So we try to get a …
Comment: How to retrieve detailed regression results from deseq2
by
Weiqian
▴ 10
Hi Michael, thanks for the answer! I'll have a look : )
Comment: DESeq filtering specific to contrasts
by
Michael Love
41k
It will likely not filter it out, but really the per-dataset details would affect the results.
Comment: DESeq filtering specific to contrasts
by
Carlin95
• 0
Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…
Comment: FilterByExpr low counts with small sample size
by
Jonathan
▴ 10
Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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