Bioconductor WateRmelon

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517

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DNAMethylation wateRmelon Computation minfi

20 months ago calen.p.ryan • 0

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984

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wateRmelon Illumina EPIC pfilter

updated 4.4 years ago by lschal • 0 • written 4.4 years ago by anne-kristin.stavrum • 0

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1.4k

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wateRmelon minfi methylation pfilter preprocessNoob

updated 4.6 years ago by tgorri ▴ 10 • written 4.6 years ago by sara.blocquiaux • 0

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1.1k

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methylation ENmix BMIQ wateRmelon

5.2 years ago • updated 5.1 years ago moldach ▴ 20

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1.5k

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minfi methylumi watermelon

7.2 years ago Tom ▴ 10

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2.2k

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wateRmelon methylation EPIC normalization

7.3 years ago Wade Davis ▴ 60

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1.4k

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limma watermelon methylumi bmiq

updated 7.3 years ago by tgorri ▴ 10 • written 7.3 years ago by poojitha.stemcell ▴ 10

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1.9k

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minfi watermelon cancer 450k normalization

updated 8.8 years ago by Kasper Daniel Hansen ★ 6.5k • written 8.8 years ago by metamaden ▴ 10

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2.0k

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watermelon betaqn pfilter getProbeInfo minfi

9.2 years ago gctromp ▴ 10

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2.2k

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convert lumi methylumi minfi wateRmelon convert lumi methylumi minfi wateRmelon

updated 10.4 years ago by Tim Triche ★ 4.2k • written 10.5 years ago by Martin Rijlaarsdam ▴ 190

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Comment: Interaction Terms in DESeq2 - Shrinkage by Michael Love 41k

Yes, apeglm requires relevel and nbinomWaldTest to generate the coefficient estimate and its SE. Alternatively you can use ashr with a con…

Comment: A ComBat-seq issue: the covariates are confounded by schlumbohm • 0

Dear ATpoint, thank you for the comment. I did correct the question. For the group, I did accidentally share the input for all three batch…

Comment: Memory errors using read.bismark? by Peter Hickey ▴ 690

If you process serially (i.e. with `BPPARAM = SerialParam()`) then you might be okay. The final object will be on the order of 250 GB in-me…

Answer: blockwiseModule crashes in the end and doesn't generate modules by xaweh28128 • 0

Test your word skills and see if you can crack the code in today's Wordle puzzle. [Nytimes wordle](https://wordlenytimes.net/quordle-game/)…

Comment: Memory errors using read.bismark? by Juan Higareda • 0

Thanks for the answer. Actually, processing one file and keeping it in memory wasn't the problem, is more processing all the 15 files to bu…

Votes

Comment: Not fully paired differential gene expression analysis

Comment: [DiffBind] Obtaining normalization factors

Answer: ComplexHeatmap: add pch to rowAnnotation when the input is a data frame with var

Comment: Not fully paired differential gene expression analysis

Answer: GSVA error

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