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wavClusteR
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wavclusters function fails to works from highConfSub calculated from the default supplied parameters, instead it only works on highConfSub calculat…
wavClusteR
2.6 years ago
xiaoleiusc
• 0
0
votes
0
replies
460
views
Issue with wavClusteR
wavClusteR
4.5 years ago
btharada
• 0
0
votes
1
reply
969
views
What tool for reads alignment are prefereble for wavClusteR input bams?
wavcluster
updated 7.4 years ago by
federico.comoglio
▴ 100 • written 7.4 years ago by
alexandr.gopanenko
▴ 50
1
vote
4
replies
1.3k
views
Error with wavClusteR annotateClusters function
wavcluster
updated 8.0 years ago by
federico.comoglio
▴ 100 • written 8.0 years ago by
S.k
▴ 10
3
votes
14
replies
2.8k
views
Errors using wavClusteR package - "range cannot be determined from the supplied arguments (too many NAs)"
wavClusteR
updated 8.0 years ago by
federico.comoglio
▴ 100 • written 8.0 years ago by
S.k
▴ 10
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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
Are you commenting on the OP's question, or adding a different question? If the latter, please start a new post rather than piggybacking on…
Answer: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Use `bquote`. See section 4.6 in [the vignette][1]. [1]: https://bioconductor.org/packages/release/bioc/vignettes/EnhancedVolcano/in…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
SamGG
▴ 350
I was thinking about removing unwanted variations at the sample level (ie a transformation shared across genes) not at the gene level. Corr…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
That's an assumption used for normalization of a sample, not an assumption you can use for an individual model. We always normalize to atte…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
SamGG
▴ 350
Is useless the assumption that the majority of genes have no variation in expression (bearing in mind that they are distributed over the en…
Votes
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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